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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yao, S."

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Search Summary

This query matches 91 Structures.

Refinements

Structure Determination Methodology

experimental (91)

Scientific Name of Source Organism

	Homo sapiens (49)
	Mus musculus (17)
	Drosophila melanogaster (5)
	Equine infectious anemia virus (5)
	Equus caballus (5)
	Severe acute respiratory syndrome coronavirus 2 (5)
	synthetic construct (4)
	Streptococcus thermophilus DGCC 7710 (3)
	Bacillus phage phi3T (2)
	Branchiostoma floridae (2)

More...

Taxonomy

	Eukaryota (69)
	Riboviria (12)
	Bacteria (5)
	Eukaryota (eukaryotes) (5)
	Duplodnaviria (4)
	other sequences (4)
	Monodnaviria (2)
	Archaea (1)
	Riboviria (RNA viruses and viroids) (1)
	environmental samples (1)

More...

Experimental Method

	X-RAY DIFFRACTION (73)
	SOLUTION NMR (17)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (91)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (23)
	2.0 - 2.5 (31)
	2.5 - 3.0 (10)
	3.0 - 3.5 (4)
	3.5 - 4.0 (3)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (4)
	2005 - 2009 (17)
	2010 - 2014 (18)
	2015 - 2019 (25)
	2020 - 2024 (25)

Enzyme Classification Name

	Hydrolases (20)
	Transferases (12)
	Ligases (2)

Symmetry Type

	Asymmetric (62)
	Cyclic (29)
	Dihedral (1)

SCOP Classification

	All beta proteins (15)
	Alpha and beta proteins (a+b) (12)
	Artifacts (9)
	Membrane and cell surface proteins and peptides (3)
	Peptides (5)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (1)
	Small proteins (2)

AllSelected

1 to 25 of 91 Structures

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1BDE \| pdb_00001bde	Download File View File

HELICAL STRUCTURE OF POLYPEPTIDES FROM THE C-TERMINAL HALF OF HIV-1 VPR, NMR, 20 STRUCTURES

Yao, S., Azad, A.A., Macreadie, I.G., Norton, R.S.

(1998) J Pept Sci 4: 426-435

Released	1998-12-02
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate NY5)
Macromolecule	VPR PROTEIN (protein)

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1D0W \| pdb_00001d0w	Download File View File

SOLUTION STRUCTURE OF LACTAM-BRIDGED C-TERMINAL ANALOGUE-I OF NEUROPEPTIDE Y

Yao, S., Norton, R.S.

(2002) J Med Chem 45: 2310-2318

Released	2000-06-16
Method	SOLUTION NMR
Macromolecule	C-TERMINAL ANALOGUE OF NEUROPEPTIDE Y, A POTENT Y2 RECEPTOR AGONIST (protein)

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1D1E \| pdb_00001d1e	Download File View File

SOLUTION STRUCTURE OF LACTAM-BRIDGED C-TERMINAL ANALOGUE-II OF NEUROPEPTIDE Y

Yao, S., Norton, R.S.

(2002) J Med Chem 45: 2310-2318

Released	2000-06-17
Method	SOLUTION NMR
Macromolecule	C-TERMINAL ANALOGUE OF NEUROPEPTIDE Y, A POTENT Y2 RECEPTOR AGONIST (protein)

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1D1F \| pdb_00001d1f	Download File View File

SOLUTION STRUCTURE OF LACTAM-BRIDGED C-TERMINAL ANALOGUE-III OF NEUROPEPTIDE Y

Yao, S., Norton, R.S.

(2002) J Med Chem 45: 2310-2318

Released	2000-06-16
Method	SOLUTION NMR
Macromolecule	C-TERMINAL ANALOGUE OF NEUROPEPTIDE Y, A POTENT Y2 RECEPTOR AGONIST (protein)

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1DSK \| pdb_00001dsk	Download File View File

NMR SOLUTION STRUCTURE OF VPR59_86, 20 STRUCTURES

Yao, S., Torres, A.M., Azad, A.A., Macreadie, I.G., Norton, R.S.

(1998) J Pept Sci 4: 426-435

Released	1998-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	VPR PROTEIN (protein)

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1RMJ \| pdb_00001rmj	Download File View File

C-terminal domain of insulin-like growth factor (IGF) binding protein-6: structure and interaction with IGF-II

Headey, S.J., Keizer, D.W., Yao, S., Brasier, G., Kantharidis, P., Bach, L.A., Norton, R.S.

(2004) Mol Endocrinol 18: 2740-2750

Released	2004-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin-like growth factor binding protein 6 (protein)

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1YXE \| pdb_00001yxe	Download File View File

Structure and inter-domain interactions of domain II from the blood stage malarial protein, apical membrane antigen 1

Feng, Z.P., Keizer, D.W., Stevenson, R.A., Yao, S., Babon, J.J., Murphy, V.J., Anders, R.F., Norton, R.S.

(2005) J Mol Biology 350: 641-656

Released	2005-07-05
Method	SOLUTION NMR
Organisms	Plasmodium falciparum 3D7
Macromolecule	apical membrane antigen 1 (protein)

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2AFJ \| pdb_00002afj	Download File View File

SPRY domain-containing SOCS box protein 2 (SSB-2)

Masters, S.L., Yao, S., Willson, T.A., Zhang, J.G., Palmer, K.R., Smith, B.J., Babon, J.J., Nicola, N.A., Norton, R.S., Nicholson, S.E.

(2006) Nat Struct Mol Biol 13: 77-84

Released	2006-01-03
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	gene rich cluster, C9 gene (protein)

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2BBU \| pdb_00002bbu	Download File View File

solution structure of mouse socs3 in complex with a phosphopeptide from the gp130 receptor

Babon, J.J., Yao, S., Norton, R.S.

(2006) Mol Cell 22: 205-216

Released	2006-05-02
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GP130 PHOSPHOPEPTIDE (protein) Suppressor of cytokine signaling 3 (protein)

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2H7T \| pdb_00002h7t	Download File View File

Solution Structure of the C-terminal Domain of Insulin-like Growth Factor Binding Protein 2 (IGFBP-2)

Kuang, Z.

(2006) J Mol Biology 364: 690-704

Released	2007-04-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin-like growth factor-binding protein 2 (protein)

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2IBB \| pdb_00002ibb	Download File View File

Crystal Structure of the First and Second FNIII Domains of Ihog

McLellan, J.S., Leahy, D.J.

(2006) Proc Natl Acad Sci U S A 103: 17208-17213

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	CG9211-PA (protein)
Unique Ligands	SO4

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2IBG \| pdb_00002ibg	Download File View File

Crystal Structure of Hedgehog Bound to the FNIII Domains of Ihog

McLellan, J.S., Leahy, D.J.

(2006) Proc Natl Acad Sci U S A 103: 17208-17213

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Drosophila melanogaster
Macromolecule	CG9211-PA (protein) Protein hedgehog (protein)
Unique Ligands	PO4

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2IC2 \| pdb_00002ic2	Download File View File

Crystal Structure of the First FNIII Domain of Ihog

McLellan, J.S., Leahy, D.J.

(2006) Proc Natl Acad Sci U S A 103: 17208-17213

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	CG9211-PA (protein)
Unique Ligands	SO4

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2JK9 \| pdb_00002jk9	Download File View File

The structure of splA-ryanodine receptor domain and SOCS box containing 1 in complex with a PAR-4 peptide

Filippakopoulos, P., Bullock, A., Keates, T., Savitsky, P., Murray, J.W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Wickstroem, M., Bountra, C., Knapp, S.

(2010) J Mol Biology 401: 389

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	PRKC APOPTOSIS WT1 REGULATOR PROTEIN (protein) SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 1 (protein)

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2JM2 \| pdb_00002jm2	Download File View File

Structure of the N-terminal subdomain of insulin-like growth factor (IGF) binding protein-6 and its interactions with IGFs

Chandrashekaran, I.R., Yao, S., Wang, C.C., Bansal, P.S., Alewood, P.F., Forbes, B.E., Wallace, J.C., Bach, L.A., Norton, R.S.

(2007) Biochemistry 46: 3065-3074

Released	2007-03-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin-like growth factor-binding protein 6 (protein)

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2JZ3 \| pdb_00002jz3	Download File View File

SOCS box elonginBC ternary complex

Babon, J.J., Sabo, J., Soetopo, A., Yao, S., Bailey, M.F., Zhang, J., Nicola, N.A., Norton, R.S.

(2008) J Mol Biology 381: 928-940

Released	2008-09-23
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	Suppressor of cytokine signaling 3 (protein) Transcription elongation factor B polypeptide 1 (protein) Transcription elongation factor B polypeptide 2 (protein)

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2L3O \| pdb_00002l3o	Download File View File

Solution structure of murine interleukin 3

Yao, S., Young, I.G., Norton, R.S., Murphy, J.M.

(2011) Biochemistry 50: 2464-2477

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Interleukin 3 (protein)

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2LUT \| pdb_00002lut	Download File View File

NMR solution structure of midkine-a

Lim, J., Yang, D., Meng, D.

To be published

Released	2013-05-01
Method	SOLUTION NMR
Organisms	Danio rerio
Macromolecule	Midkine-related growth factor (protein)

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2LUU \| pdb_00002luu	Download File View File

NMR solution structure of midkine-b, mdkb

Yang, D., Lim, J., Meng, D.

(2013) Biochem J 451: 407-415

Released	2013-05-01
Method	SOLUTION NMR
Organisms	Danio rerio
Macromolecule	Midkine-related growth factor Mdk2 (protein)

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2V24 \| pdb_00002v24	Download File View File

Structure of the human SPRY domain-containing SOCS box protein SSB-4

Uppenberg, J., Bullock, A., Keates, T., Savitsky, P., Pike, A.C.W., Ugochukwu, E., Bunkoczi, G., von Delft, F., Weigelt, J., Arrowsmith, C.H., Edwards, A., Sundstrom, M., Knapp, S.

(2010) J Mol Biology 401: 389

Released	2007-07-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 4 (protein)
Unique Ligands	NI

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3DXF \| pdb_00003dxf	Download File View File

Crystal structure of the HSCARG R37A mutant

Li, Y., Meng, G., Dai, X., Luo, M., Zheng, X.

(2009) J Mol Biology 387: 1277-1285

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	NmrA-like family domain-containing protein 1 (protein)

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3E5M \| pdb_00003e5m	Download File View File

Crystal structure of the HSCARG Y81A mutant

Li, Y., Meng, G., Dai, X., Luo, M., Zheng, X.

(2009) J Mol Biology 387: 1277-1285

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	NmrA-like family domain-containing protein 1 (protein)

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3EK9 \| pdb_00003ek9	Download File View File

SPRY Domain-containing SOCS Box Protein 2: Crystal Structure and Residues Critical for Protein Binding

Kuang, Z., Yao, S., Xu, Y., Garrett, T.J.P., Norton, R.S.

(2009) J Mol Biology 386: 662-674

Released	2009-02-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	SPRY domain-containing SOCS box protein 2 (protein)
Unique Ligands	GOL

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3EMW \| pdb_00003emw	Download File View File

Crystal Structure of human splA/ryanodine receptor domain and SOCS box containing 2 (SPSB2) in complex with a 20-residue VASA peptide

Filippakopoulos, P., Sharpe, T., Keates, T., Murray, J.W., Savitsky, P., Roos, A.K., Pike, A.C.W., Von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Bullock, A., Structural Genomics Consortium (SGC)

(2010) J Mol Biology 401: 389-402

Released	2008-10-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	Peptide (VASA) (protein) SPRY domain-containing SOCS box protein 2 (protein)
Unique Ligands	EDO

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3F2O \| pdb_00003f2o	Download File View File

Crystal Structure of human splA/ryanodine receptor domain and SOCS box containing 1 (SPSB1) in complex with a 20-residue VASA peptide

Filippakopoulos, P., Sharpe, T., Keates, T., Murray, J.W., Savitsky, P., Roos, A., Pike, A.C.W., Von Delft, F., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Bountra, C., Knapp, S., Bullock, A., Structural Genomics Consortium (SGC)

(2010) J Mol Biology 401: 389-402

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	20-mer peptide from ATP-dependent RNA helicase vasa (protein) SPRY domain-containing SOCS box protein 1 (protein)

1 to 25 of 91 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BDE | pdb_00001bde

1D0W | pdb_00001d0w

1D1E | pdb_00001d1e

1D1F | pdb_00001d1f

1DSK | pdb_00001dsk

1RMJ | pdb_00001rmj

1YXE | pdb_00001yxe

2AFJ | pdb_00002afj

2BBU | pdb_00002bbu

2H7T | pdb_00002h7t

2IBB | pdb_00002ibb

2IBG | pdb_00002ibg

2IC2 | pdb_00002ic2

2JK9 | pdb_00002jk9

2JM2 | pdb_00002jm2

2JZ3 | pdb_00002jz3

2L3O | pdb_00002l3o

2LUT | pdb_00002lut

2LUU | pdb_00002luu

2V24 | pdb_00002v24

3DXF | pdb_00003dxf

3E5M | pdb_00003e5m

3EK9 | pdb_00003ek9

3EMW | pdb_00003emw

3F2O | pdb_00003f2o