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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhukov, I."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (12)
	Cucurbita maxima (2)
	Galleria mellonella (2)
	Mus musculus (2)
	bovine alphaherpesvirus 1 (2)
	Bos taurus (1)
	Candidatus Cenarchaeum symbiosum (1)
	Human alphaherpesvirus 1 (1)
	Phytophthora infestans (1)

Taxonomy

	Eukaryota (20)
	Duplodnaviria (3)
	Archaea (1)

Experimental Method

	SOLUTION NMR (23)
	X-RAY DIFFRACTION (3)
	SOLUTION SCATTERING (2)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (1)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (5)
	2010 - 2014 (13)
	2015 - 2019 (5)
	2020 - 2024 (2)

Enzyme Classification Name

	Ligases (2)
	Isomerases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (19)
	Cyclic (6)
	Dihedral (1)

SCOP Classification

	All alpha proteins (6)
	Alpha and beta proteins (a+b) (3)
	Small proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 26 Structures

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1LU0	Download File View File

Atomic Resolution Structure of Squash Trypsin Inhibitor: Unexpected Metal Coordination

Thaimattam, R., Tykarska, E., Bierzynski, A., Sheldrick, G.M., Jaskolski, M.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1448-1461

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Cucurbita maxima
Macromolecule	Trypsin inhibitor I (protein)
Unique Ligands	GOL, MRD, SO4, ZN

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2JPT	Download File View File

Structural changes induced in apo-s100a1 protein by the disulphide formation between its CYS85 residue and b-mercaptoethanol

Zhukov, I., Ejchart, A., Bierzynski, A.

(2008) Biochemistry 47: 640-650

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	Protein S100-A1 (protein)
Unique Ligands	BME

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2JT9	Download File View File

NMR structure of immunosuppressory peptide containing cyclolinopeptide X and antennapedia(43-58) sequences

Jaremko, L., Jaremko, M., Zhukov, I., Cebrat, M.

To be published

Released	2008-07-29
Method	SOLUTION NMR
Macromolecule	5-mer immunosuppressory peptide from cyclolinopeptide X (protein) Modified 16-mer immunosuppressory peptide from Homeotic protein antennapedia (protein)
Unique Ligands	ABU, ACA

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2JTA	Download File View File

NMR structure of immunosuppressory ubiquitin fragment is similar to related ubiquitin region.

Jaremko, M., Jaremko, L., Zhukov, I., Cebrat, M.

(2009) Biopolymers 91: 423-431

Released	2008-07-29
Method	SOLUTION NMR
Macromolecule	10-mer ubiquitin peptide (protein)

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2KUN	Download File View File

Three dimensional structure of HuPrP(90-231 M129 Q212P)

Ilc, G., Giachin, G., Jaremko, M., Jaremko, L., Zhukov, I., Plavec, J., Legname, G., Benetti, F.

(2010) PLoS One 5: e11715-e11715

Released	2010-08-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2L0P	Download File View File

Solution structure of human apo-S100A1 protein by NMR spectroscopy

Nowakowski, M., Jaremko, L., Jaremko, M., Bierzynski, A., Zhukov, I., Ejchart, A.

(2011) J Struct Biol 174: 391-399

Released	2011-04-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	S100 calcium binding protein A1 (protein)

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2LEJ	Download File View File

human prion protein mutant HuPrP(90-231, M129, V210I)

Biljan, I., Ilc, G., Giachin, G., Raspadori, A., Zhukov, I., Plavec, J., Legname, G.

(2011) J Mol Biology 412: 660-673

Released	2011-08-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2LFT	Download File View File

Human prion protein with E219K protective polymorphism

Biljan, I., Ilc, G., Giacin, G., Zhukov, I., Plavec, J., Legname, G.

(2012) Biochem J 446: 243-251

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2LHL	Download File View File

Chemical Shift Assignments and solution structure of human apo-S100A1 E32Q mutant

Ruszczynska-Bartnik, K., Zdanowski, K., Zhukov, I., Bierzynski, A., Ejchart, A.

To be published

Released	2012-08-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein S100-A1 (protein)

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2LLS	Download File View File

solution structure of human apo-S100A1 C85M

Budzinska, M., Jaremko, L., Jaremko, M., Zdanowski, K., Zhukov, I., Bierzynski, A., Ejchart, A.

To be published

Released	2012-12-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein S100-A1 (protein)

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2LLT	Download File View File

Post-translational S-nitrosylation is an endogenous factor fine-tuning human S100A1 protein properties

Lenarcic Zivkovic, M., Zareba-Koziol, M., Zhukova, L., Poznanski, J., Zhukov, I., Wyslouch-Cieszynska, A.

(2012) J Biological Chem 287: 40457-40470

Released	2012-09-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein S100-A1 (protein)

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2LLU	Download File View File

Post-translational S-nitrosylation is an endogenous factor fine-tuning human S100A1 protein properties

Lenarcic Zivkovic, M., Zareba-Koziol, M., Zhukova, L., Poznanski, J., Zhukov, I., Wyslouch-Cieszynska, A.

(2012) J Biological Chem 287: 40457-40470

Released	2012-09-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein S100-A1 (protein)

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2LSB	Download File View File

Solution-state NMR structure of the human prion protein

Biljan, I., Ilc, G., Giancin, G., Zhukov, I., Plavec, J., Legname, G.

(2012) Biochem J 446: 243-251

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Major prion protein (protein)

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2LZJ	Download File View File

Refined solution structure and dynamics of First Catalytic Cysteine Half-domain from mouse E1 enzyme

Jaremko, M., Jaremko, L., Nowakowski, M., Szczepanowski, R.H., Filipek, R., Wojciechowski, M., Bochtler, M., Ejchart, A.

(2014) J Struct Biol 185: 69-78

Released	2013-09-18
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Ubiquitin-like modifier-activating enzyme 1 (protein)

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2M5X	Download File View File

Novel method of protein purification for structural research. Example of ultra high resolution structure of SPI-2 inhibitor by X-ray and NMR spectroscopy.

Lenarcic Zivkovic, M., Dvornyk, A., Kludkiewicz, B., Kopera, E., Zagorski-Ostoja, W., Grzelak, K., Zhukov, I., Bal, W.

(2014) PLoS One 9: e106936-e106936

Released	2014-03-12
Method	SOLUTION NMR
Organisms	Galleria mellonella
Macromolecule	Silk protease inhibitor 2 (protein)

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2NAR	Download File View File

Solution structure of AVR3a_60-147 from Phytophthora infestans

Matena, A., Bayer, P., Zhukov, I., Stanek, J., Kozminski, W., van West, P., Wawra, S.

(2017) Plant Cell 29: 1184-1195

Released	2017-01-11
Method	SOLUTION NMR
Organisms	Phytophthora infestans
Macromolecule	Effector protein Avr3a (protein)

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2RQS	Download File View File

3D structure of Pin from the psychrophilic archeon Cenarcheaum symbiosum (CsPin)

Zhukov, I., Jaremko, L., Jaremko, M., Mueller, J.W., Bayer, P.

(2011) J Biological Chem 286: 6554-6565

Released	2010-11-24
Method	SOLUTION NMR
Organisms	Candidatus Cenarchaeum symbiosum
Macromolecule	Parvulin-like peptidyl-prolyl isomerase (protein)

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2V1V	Download File View File

3D STRUCTURE OF THE M8L MUTANT OF SQUASH TRYPSIN INHIBITOR CMTI-I

Sledz, P., Bolewska, K., Bierzynski, A., Zhukov, I.

(2000) Protein Sci 9: 273-279

Released	2007-06-19
Method	SOLUTION NMR
Organisms	Cucurbita maxima
Macromolecule	TRYPSIN INHIBITOR 1 (protein)

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2V31	Download File View File

Structure of First Catalytic Cysteine Half-domain of mouse ubiquitin- activating enzyme

Jaremko, L., Jaremko, M., Wojciechowski, W., Filipek, R., Szczepanowski, R.H., Bochtler, M., Zhukov, I.

To be published

Released	2008-06-24
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	UBIQUITIN-ACTIVATING ENZYME E1 X (protein)

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4HGU	Download File View File

Crystal Structure of Galleria mellonella Silk Protease Inhibitor 2

Krzywda, S., Jaskolski, M., Dvornyk, A., Kludkiewicz, B., Grzelak, K., Zagorski, W., Bal, W., Kopera, E.

(2014) PLoS One 9: e106936-e106936

Released	2013-10-09
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Galleria mellonella
Macromolecule	Silk protease inhibitor 2 (protein)
Unique Ligands	NA

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6QAN	Download File View File

Structure determination of N-terminal fragment of UL49.5 protein from bovine herpesvirus 1 by NMR spectroscopy and molecular dynamics

Karska, N., Rodziewicz-Motowidlo, S.

(2019) Biochim Biophys Acta Biomembr 1861: 926-938

Released	2019-02-27
Method	SOLUTION NMR
Organisms	bovine alphaherpesvirus 1
Macromolecule	Envelope glycoprotein N (protein)

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6QBJ	Download File View File

Structure determination of transmembrane- C-terminal fragment of UL49.5 protein from bovine herpesvirus 1 by NMR spectroscopy and molecular dynamics

Karska, N., Rodziewicz-Motowidlo, S.

(2019) Biochim Biophys Acta Biomembr 1861: 926-938

Released	2019-02-27
Method	SOLUTION NMR
Organisms	bovine alphaherpesvirus 1
Macromolecule	Envelope glycoprotein N (protein)

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6ROA	Download File View File

Crystal structure of V57G mutant of human cystatin C

Orlikowska, M., Behrendt, I., Borek, D., Otwinowski, Z., Skowron, P., Szymanska, A.

(2020) FEBS J 287: 361-376

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Cystatin-C (protein)

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6RPV	Download File View File

Extremely stable monomeric variant of human cystatin C with single amino acid substitution

Zhukov, I., Rodziewicz-Motowidlo, S., Maszota-Zieleniak, M., Jurczak, P., Kozak, M.

(2020) FEBS J 287: 361-376

Released	2019-07-31
Method	SOLUTION NMR SOLUTION SCATTERING
Organisms	Homo sapiens
Macromolecule	Cystatin-C (protein)

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8ONG	Download File View File

Structure of the endothelial monocyte activating polypeptide II (EMAP II) in solution

Lozhko, D., Kolomiiets, L., Kornelyuk, A.I., Zhukov, I.

To be published

Released	2024-04-10
Method	SOLUTION NMR SOLUTION SCATTERING
Organisms	Homo sapiens
Macromolecule	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (protein)