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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = BA

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Search Summary

This query matches 236 Structures.

Refinements

Structure Determination Methodology

experimental (236)

Scientific Name of Source Organism

	synthetic construct (42)
	Homo sapiens (37)
	Caldanaerobacter subterraneus subsp. tengcongensis (16)
	Rattus norvegicus (10)
	Streptomyces lividans (9)
	Mus musculus (6)
	Gallus gallus (5)
	Arabidopsis thaliana (4)
	Bacillus cereus ATCC 14579 (4)
	Brucella anthropi (4)

More...

Taxonomy

	Eukaryota (75)
	Bacteria (70)
	other sequences (42)
	Archaea (2)
	unclassified sequences (2)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (233)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (108)
	DNA (85)
	RNA (55)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (21)
	1.5 - 2.0 (59)
	2.0 - 2.5 (51)
	2.5 - 3.0 (53)
	3.0 - 3.5 (32)
	3.5 - 4.0 (12)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (10)
	2005 - 2009 (28)
	2010 - 2014 (71)
	2015 - 2019 (65)
	2020 - 2024 (56)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (17)
	Transferases (16)
	Lyases (5)
	Isomerases (5)
	Oxidoreductases (4)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (35)
	MemProtMD (33)
	mpstruc (24)
	OPM (16)

Symmetry Type

	Asymmetric (46)
	Cyclic (56)
	Dihedral (5)
	Octahedral (2)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	All beta proteins (14)
	Alpha and beta proteins (a/b) (7)
	Multi-domain proteins (alpha and beta) (7)
	Artifacts (7)
	All alpha proteins (6)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 236 Structures

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1DJH \| pdb_00001djh	Download File View File

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH BARIUM

Essen, L.-O., Perisic, O., Williams, R.L.

(1997) Biochemistry 36: 2753-2762

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1 (protein)
Unique Ligands	ACT, BA

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1I0F \| pdb_00001i0f	Download File View File

1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-AMINOOXYETHYL THYMINE IN PLACE OF T6, BA-FORM

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(127)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	BA

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1IHH \| pdb_00001ihh	Download File View File

2.4 ANGSTROM CRYSTAL STRUCTURE OF AN OXALIPLATIN 1,2-D(GPG) INTRASTRAND CROSS-LINK IN A DNA DODECAMER DUPLEX

Spingler, B., Whittington, D.A., Lippard, S.J.

(2001) Inorg Chem 40: 5596-5602

Released	2001-10-26
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-D(CPCPTPCPTPGPGPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPCPCPAPGPAPGPG)-3' (nucleic acid)
Unique Ligands	BA, DNH, PT

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1J6S \| pdb_00001j6s	Download File View File

Crystal Structure of an RNA Tetraplex (UGAGGU)4 with A-tetrads, G-tetrads, U-tetrads and G-U octads

Pan, B., Xiong, Y., Shi, K., Deng, J., Sundaralingam, M.

(2003) Structure 11: 815-823

Released	2003-08-05
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	5'-R((BRUPGPAPGPGPU)-3' (nucleic acid)
Unique Ligands	BA, NA

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1KD4 \| pdb_00001kd4	Download File View File

The Crystal Structure of r(GGUCACAGCCC)2, Barium form

Kacer, V., Scaringe, S.A., Scarsdale, J.N., Rife, J.P.

(2003) Acta Crystallogr D Biol Crystallogr 59: 423-432

Released	2003-03-04
Method	X-RAY DIFFRACTION 1.85 Å
Macromolecule	5'-R(GPGPUPCPAPCPAPGPCPCP*C)-3' (nucleic acid)
Unique Ligands	BA

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1NTA \| pdb_00001nta	Download File View File

2.9 A crystal structure of Streptomycin RNA-aptamer

Tereshko, V., Skripkin, E., Patel, D.J.

(2003) Chem Biol 10: 175-187

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	5'-R(CPGPGPCPAPCPCPAPCPGPGPUPCPGPGPAPUPC)-3' (nucleic acid) 5'-R(GPGPAPUPCPGPCPAPUPUPUPGPGPAPCPUPUPCPUPGPCPC)-3' (nucleic acid)
Unique Ligands	BA, NA, SRY

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1QYK \| pdb_00001qyk	Download File View File

GCATGCT + Barium

Cardin, C.J., Gan, Y., Thorpe, J.H., Teixeira, S.C.M., Gale, B.C., Moraes, M.I.A.

To be published

Released	2003-10-21
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	5'-D(GPCPAPTPGPCP*T)-3' (nucleic acid)
Unique Ligands	BA

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1SOF \| pdb_00001sof	Download File View File

Crystal structure of the azotobacter vinelandii bacterioferritin at 2.6 A resolution

Liu, H.L., Huang, J.F., Bi, R.C.

(2004) FEBS Lett 573: 93-98

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Azotobacter vinelandii
Macromolecule	Bacterioferritin (protein)
Unique Ligands	BA, FE2, HEM, MG

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1U9S \| pdb_00001u9s	Download File View File

Crystal structure of the specificity domain of Ribonuclease P of the A-type

Krasilnikov, A.S., Xiao, Y., Pan, T., Mondragon, A.

(2004) Science 306: 104-107

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	RIBONUCLEASE P (nucleic acid)
Unique Ligands	BA

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1VBZ \| pdb_00001vbz	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	BA

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1WRO \| pdb_00001wro	Download File View File

Metal Ion dependency of the antiterminator protein, HutP, for binding to the terminator region of hut mRNA- A structural basis

Kumarevel, T., Mizuno, H., Kumar, P.K.R.

(2005) Nucleic Acids Res 33: 5494-5502

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bacillus subtilis
Macromolecule	Hut operon positive regulatory protein (protein)
Unique Ligands	BA, HIS

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1XCS \| pdb_00001xcs	Download File View File

structure of oligonucleotide/drug complex

Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.

(2005) J Biol Inorg Chem 10: 476-482

Released	2005-07-19
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	A4L, BA, CO

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1XCU \| pdb_00001xcu	Download File View File

oligonucleotid/drug complex

Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.

(2005) J Biol Inorg Chem 10: 476-482

Released	2005-07-19
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	AN9, BA, CO, NA

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1Y6S \| pdb_00001y6s	Download File View File

HIV-1 DIS(Mal) duplex Ba-soaked

Ennifar, E., Walter, P., Dumas, P.

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	BA

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1Y7F \| pdb_00001y7f	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(2NT)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	BA

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1ZQB \| pdb_00001zqb	Download File View File

DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR)

Pelletier, H., Sawaya, M.R.

(1996) Biochemistry 35: 12778-12787

Released	1996-11-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)) (protein) DNA (5'-D(CPAPTPTPAPGPAPA)-3') (nucleic acid) DNA (5'-D(TPCPTPAPAPTP*G)-3') (nucleic acid)
Unique Ligands	BA

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1ZQN \| pdb_00001zqn	Download File View File

DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR)

Pelletier, H., Sawaya, M.R.

(1996) Biochemistry 35: 12778-12787

Released	1996-11-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)) (protein) DNA (5'-D(CPAPTPTPAPGPAPA)-3') (nucleic acid) DNA (5'-D(TPCPTPAPAPTP*G)-3') (nucleic acid)
Unique Ligands	BA

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220D \| pdb_0000220d	Download File View File

INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA

Gao, Y.-G., Robinson, H., Van Boom, J.H., Wang, A.H.-J.

(1995) Biophys J 69: 559-568

Released	1996-01-31
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(APCPCPCPGPCPGPGPGPT)-3') (nucleic acid)
Unique Ligands	BA

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284D \| pdb_0000284d	Download File View File

THE BI-LOOP, A NEW GENERAL FOUR-STRANDED DNA MOTIF

Salisbury, S.A., Wilson, S.E., Powell, H.R., Kennard, O., Lubini, P., Sheldrick, G.M., Escaja, N., Alazzouzi, E., Grandas, A., Pedroso, E.

(1997) Proc Natl Acad Sci U S A 94: 5515-5518

Released	1997-06-11
Method	X-RAY DIFFRACTION 1.1 Å
Macromolecule	DNA (5'-CD(PAPTPTPCPAPTPTP*C)-3') (nucleic acid)
Unique Ligands	BA, NA

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2ADI \| pdb_00002adi	Download File View File

Crystal structure of monoclonal anti-CD4 antibody Q425 in complex with Barium

Zhou, T., Hamer, D.H., Hendrickson, W.A., Sattentau, Q.J., Kwong, P.D.

(2005) Proc Natl Acad Sci U S A 102: 14575-14580

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	Q425 Fab Heavy chain (protein) Q425 Fab Light chain (protein)
Unique Ligands	BA, TRS

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2B5E \| pdb_00002b5e	Download File View File

Crystal Structure of Yeast Protein Disulfide Isomerase

Schindelin, H., Tian, G.

(2006) Cell 124: 61-73

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein disulfide-isomerase (protein)
Unique Ligands	BA, GOL

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2BOU \| pdb_00002bou	Download File View File

EGF Domains 1,2,5 of human EMR2, a 7-TM immune system molecule, in complex with barium.

Abbott, R.J.M., Spendlove, I., Roversi, P., Teriete, P., Knott, V., Handford, P.A., McDonnell, J.M., Lea, S.M.

(2007) J Biological Chem 282: 22023

Released	2006-10-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	EGF-LIKE MODULE CONTAINING MUCIN-LIKE HORMONE RECEPTOR-LIKE 2 PRECURSOR (protein)
Unique Ligands	BA, CA, CAC

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2CIS \| pdb_00002cis	Download File View File

Structure-based functional annotation: Yeast ymr099c codes for a D- hexose-6-phosphate mutarotase. Complex with tagatose-6-phosphate

Graille, M., Baltaze, J.-P., Leulliot, N., Liger, D., Quevillon-Cheruel, S., van Tilbeurgh, H.

(2006) J Biological Chem 281: 30175-30185

Released	2006-07-12
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	GLUCOSE-6-PHOSPHATE 1-EPIMERASE (protein)
Unique Ligands	BA, TA6

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2DNS \| pdb_00002dns	Download File View File

The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with D-Phenylalanine

Okazaki, S., Suzuki, A., Komeda, H., Asano, Y., Yamane, T.

(2007) J Mol Biology 368: 79-91

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Brucella anthropi
Macromolecule	D-amino acid amidase (protein)
Unique Ligands	BA, DPN

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2DQO \| pdb_00002dqo	Download File View File

Crystal Structure of d(CXCTXCTTC):r(gaagaagag) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine

Juan, E.C.M., Kondo, J., Ito, T., Ueno, Y., Matsuda, A., Takenaka, A.

(2007) Nucleic Acids Res 35: 1969-1977

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.3 Å
Macromolecule	DNA (5'-D(DCP(OMU)PDCPDTP(OMU)PDCPDTPDTPDC)-3') (nucleic acid) RNA (5'-R(GPAPAPGPAPAPGPAPG)-3') (nucleic acid)
Unique Ligands	BA, CMY, NA

1 to 25 of 236 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DJH | pdb_00001djh

1I0F | pdb_00001i0f

1IHH | pdb_00001ihh

1J6S | pdb_00001j6s

1KD4 | pdb_00001kd4

1NTA | pdb_00001nta

1QYK | pdb_00001qyk

1SOF | pdb_00001sof

1U9S | pdb_00001u9s

1VBZ | pdb_00001vbz

1WRO | pdb_00001wro

1XCS | pdb_00001xcs

1XCU | pdb_00001xcu

1Y6S | pdb_00001y6s

1Y7F | pdb_00001y7f

1ZQB | pdb_00001zqb

1ZQN | pdb_00001zqn

220D | pdb_0000220d

284D | pdb_0000284d

2ADI | pdb_00002adi

2B5E | pdb_00002b5e

2BOU | pdb_00002bou

2CIS | pdb_00002cis

2DNS | pdb_00002dns

2DQO | pdb_00002dqo