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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 1,532 Structures.

Refinements

Structure Determination Methodology

experimental (1,532)

Scientific Name of Source Organism

	Homo sapiens (463)
	Mus musculus (78)
	synthetic construct (60)
	Human immunodeficiency virus 1 (47)
	Escherichia coli (33)
	Gallus gallus (27)
	Tequatrovirus T4 (27)
	Oceanobacillus iheyensis (25)
	Escherichia coli K-12 (24)
	Danio rerio (19)

More...

Taxonomy

	Eukaryota (810)
	Bacteria (579)
	Riboviria (101)
	other sequences (61)
	Archaea (47)
	Duplodnaviria (32)
	unclassified sequences (17)
	Eukaryota (eukaryotes) (5)
	Varidnaviria (5)
	Monodnaviria (1)

More...

Experimental Method

	X-RAY DIFFRACTION (1,522)
	ELECTRON MICROSCOPY (10)

Polymer Entity Type

	Protein (1,507)
	DNA (112)
	RNA (52)
	NA-hybrid (4)

Refinement Resolution (Å)

	0.5 - 1.0 (8)
	1.0 - 1.5 (184)
	1.5 - 2.0 (597)
	2.0 - 2.5 (437)
	2.5 - 3.0 (213)
	3.0 - 3.5 (74)
	3.5 - 4.0 (15)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	1995 - 1999 (25)
	2000 - 2004 (67)
	2005 - 2009 (161)
	2010 - 2014 (361)
	2015 - 2019 (421)
	2020 - 2024 (474)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (388)
	Transferases (345)
	Oxidoreductases (169)
	Lyases (61)
	Ligases (28)
	Isomerases (25)
	Translocases (2)

Membrane Protein Annotation

	OPM (28)
	PDBTM (25)
	mpstruc (24)
	MemProtMD (19)

Symmetry Type

	Asymmetric (997)
	Cyclic (431)
	Dihedral (118)
	Tetrahedral (14)
	Icosahedral (4)
	Helical (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (236)
	All beta proteins (182)
	Alpha and beta proteins (a+b) (161)
	All alpha proteins (90)
	Artifacts (142)
	Small proteins (34)
	Multi-domain proteins (alpha and beta) (34)
	Coiled coil proteins (10)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 1,532 Structures

Page 1 of 62

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16PK \| pdb_000016pk	Download File View File

PHOSPHOGLYCERATE KINASE FROM TRYPANOSOMA BRUCEI BISUBSTRATE ANALOG

Bernstein, B.E., Bressi, J., Blackburn, M., Gelb, M., Hol, W.G.J.

(1998) J Mol Biology 279: 1137-1148

Released	1998-11-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trypanosoma brucei
Macromolecule	3-PHOSPHOGLYCERATE KINASE (protein)
Unique Ligands	BIS, EPE

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1AJK \| pdb_00001ajk	Download File View File

CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE CPA16M-84

Ay, J., Heinemann, U.

(1998) Proteins 30: 155-167

Released	1998-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Paenibacillus macerans
Macromolecule	CIRCULARLY PERMUTED (1-3,1-4)-BETA-D-GLUCAN 4-GLUCANOHYDROLASE (protein)
Unique Ligands	CA, EPE, PO4

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1ASU \| pdb_00001asu	Download File View File

AVIAN SARCOMA VIRUS INTEGRASE CATALYTIC CORE DOMAIN CRYSTALLIZED FROM 2% PEG 400, 2M AMMONIUM SULFATE, HEPES PH 7.5

Bujacz, G., Jaskolski, M., Alexandratos, J., Wlodawer, A.

(1995) J Mol Biology 253: 333-346

Released	1995-11-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE

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1ASW \| pdb_00001asw	Download File View File

AVIAN SARCOMA VIRUS INTEGRASE CATALYTIC CORE DOMAIN CRYSTALLIZED FROM 20% PEG 4000, 10% ISOPROPANOL, HEPES PH 7.5 USING SELENOMETHIONINE SUBSTITUTED PROTEIN; DATA COLLECTED AT-165 DEGREES C

Bujacz, G., Jaskolski, M., Alexandratos, J., Wlodawer, A.

(1995) J Mol Biology 253: 333-346

Released	1995-11-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE, IPA

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1BHT \| pdb_00001bht	Download File View File

NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR

Ultsch, M.H., Lokker, N.A., Godowski, P.J., De Vos, A.M.

(1998) Structure 6: 1383-1393

Released	1998-11-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HEPATOCYTE GROWTH FACTOR (protein)
Unique Ligands	EPE, SO4

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1BOT \| pdb_00001bot	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE.

Ormo, M., Bystrom, C.E., Remington, S.J.

(1998) Biochemistry 37: 16565-16572

Released	1999-01-19
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLYCEROL KINASE) (protein)
Unique Ligands	EPE, GOL

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1BVQ \| pdb_00001bvq	Download File View File

THREE-DIMENSIONAL STRUCTURE OF 4-HYDROXYBENZOYL COA THIOESTERASE FROM PSEUDOMONAS SP. STRAIN CBS-3.

Holden, H.M., Benning, M.M., Dunaway-Mariano, D.

(1998) J Biological Chem 273: 33572-33579

Released	1998-09-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas sp. CBS3
Macromolecule	PROTEIN (4-HYDROXYBENZOYL COA THIOESTERASE) (protein)
Unique Ligands	EPE

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1BZS \| pdb_00001bzs	Download File View File

CRYSTAL STRUCTURE OF MMP8 COMPLEXED WITH HMR2909

Schreuder, H., Brachvogel, V., Loenze, P.

(1999) J Med Chem 42: 1908-1920

Released	2000-05-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL COLLAGENASE (protein)
Unique Ligands	BSI, CA, EPE, ZN

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1CXQ \| pdb_00001cxq	Download File View File

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM AMMONIUM SULFATE

Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Merkel, G., Skalka, A.M., Wlodawer, A.

(1999) Biochemistry 38: 13512-13522

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE, GOL

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1CZB \| pdb_00001czb	Download File View File

ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN FROM HEPES

Lubkowski, J., Dauter, Z., Yang, F., Alexandratos, J., Merkel, G., Skalka, A.M., Wlodawer, A.

(1999) Biochemistry 38: 13512-13522

Released	1999-09-08
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Avian sarcoma virus
Macromolecule	AVIAN SARCOMA VIRUS INTEGRASE (protein)
Unique Ligands	EPE

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1D1P \| pdb_00001d1p	Download File View File

CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1)

Wang, S., Tabernero, L., Zhang, M., Harms, E., Van Etten, R.L., Stauffacher, C.V.

(2000) Biochemistry 39: 1903-1914

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TYROSINE PHOSPHATASE (protein)
Unique Ligands	EPE

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1D2Z \| pdb_00001d2z	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A COMPLEX BETWEEN THE DEATH DOMAINS OF PELLE AND TUBE

Xiao, T., Towb, P., Wasserman, S.A., Sprang, S.R.

(1999) Cell 99: 545-555

Released	1999-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	DEATH DOMAIN OF PELLE (protein) DEATH DOMAIN OF TUBE (protein)
Unique Ligands	EPE

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1DG9 \| pdb_00001dg9	Download File View File

CRYSTAL STRUCTURE OF BOVINE LOW MOLECULAR WEIGHT PTPASE COMPLEXED WITH HEPES

Zhang, M., Zhou, M., Van Etten, R.L., Stauffacher, C.V.

(1997) Biochemistry 36: 15-23

Released	1999-12-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	TYROSINE PHOSPHATASE (protein)
Unique Ligands	EPE

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1EU1 \| pdb_00001eu1	Download File View File

THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.

Li, H.K., Temple, K., Rajagopalan, K.V., Schindelin, H.

(2000) J Am Chem Soc 122: 7673-7680

Released	2000-08-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Cereibacter sphaeroides
Macromolecule	DIMETHYL SULFOXIDE REDUCTASE (protein)
Unique Ligands	6MO, CD, EPE, GLC, MGD, O, SO4

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1EVQ \| pdb_00001evq	Download File View File

THE CRYSTAL STRUCTURE OF THE THERMOPHILIC CARBOXYLESTERASE EST2 FROM ALICYCLOBACILLUS ACIDOCALDARIUS

De Simone, G., Galdiero, S., Manco, G., Lang, D., Rossi, M., Pedone, C.

(2000) J Mol Biology 303: 761-771

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Alicyclobacillus acidocaldarius
Macromolecule	SERINE HYDROLASE (protein)
Unique Ligands	EPE, TRS

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1EWK \| pdb_00001ewk	Download File View File

CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE

Kunishima, N., Shimada, Y., Jingami, H., Morikawa, K.

(2000) Nature 407: 971-977

Released	2000-12-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 (protein)
Unique Ligands	EPE, GLU, MG, NAG

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1FJJ \| pdb_00001fjj	Download File View File

CRYSTAL STRUCTURE OF E.COLI YBHB PROTEIN, A NEW MEMBER OF THE MAMMALIAN PEBP FAMILY

Serre, L., Pereira de Jesus, K., Benedetti, H., Bureaud, N., Schoentgen, F., Zelwer, C.

(2001) J Mol Biology 310: 617-634

Released	2001-07-18
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL 17.1 KDA PROTEIN IN MODC-BIOA INTERGENIC REGION (protein)
Unique Ligands	EPE

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1G13 \| pdb_00001g13	Download File View File

HUMAN GM2 ACTIVATOR STRUCTURE

Wright, C.S., Li, S.C., Rastinejad, F.

(2000) J Mol Biology 304: 411-422

Released	2001-04-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	GANGLIOSIDE M2 ACTIVATOR PROTEIN (protein)
Unique Ligands	EPE

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1G5A \| pdb_00001g5a	Download File View File

AMYLOSUCRASE FROM NEISSERIA POLYSACCHAREA

Skov, L.K., Mirza, O., Henriksen, A., De Montalk, G.P., Remaud-Simeon, M., Sarcabal, P., Willemot, R.-M., Monsan, P., Gajhede, M.

(2001) J Biological Chem 276: 25273-25278

Released	2001-10-31
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Neisseria polysaccharea
Macromolecule	AMYLOSUCRASE (protein)
Unique Ligands	EPE, NA, TRS

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1G5C \| pdb_00001g5c	Download File View File

CRYSTAL STRUCTURE OF THE 'CAB' TYPE BETA CLASS CARBONIC ANHYDRASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Strop, P., Smith, K.S., Iverson, T.M., Ferry, J.G., Rees, D.C.

(2001) J Biological Chem 276: 10299-10305

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	BETA-CARBONIC ANHYDRASE (protein)
Unique Ligands	CA, EPE, ZN

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1GKA \| pdb_00001gka	Download File View File

The molecular basis of the coloration mechanism in lobster shell. beta-crustacyanin at 3.2 A resolution

Cianci, M., Rizkallah, P.J., Olczak, A., Raftery, J., Chayen, N.E., Zagalsky, P.F., Helliwell, J.R.

(2002) Proc Natl Acad Sci U S A 99: 9795

Released	2002-08-08
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Homarus gammarus
Macromolecule	CRUSTACYANIN A1 SUBUNIT (protein) CRUSTACYANIN A2 SUBUNIT (protein)
Unique Ligands	AXT, D12, EPE, TRS

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1GKI \| pdb_00001gki	Download File View File

Plasmid coupling protein TrwB in complex with ADP and Mg2+.

Gomis-Ruth, F.X., Moncalian, G., De La cruz, F., Coll, M.

(2001) Nature 409: 637

Released	2002-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	CONJUGAL TRANSFER PROTEIN TRWB (protein)
Unique Ligands	ADP, EPE, MG

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1GKP \| pdb_00001gkp	Download File View File

D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group C2221

Abendroth, J., Niefind, K., Schomburg, D.

(2002) J Mol Biology 320: 143

Released	2002-06-27
Method	X-RAY DIFFRACTION 1.295 Å
Organisms	Thermus sp.
Macromolecule	HYDANTOINASE (protein)
Unique Ligands	EPE, SO4, ZN

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1GL4 \| pdb_00001gl4	Download File View File

Nidogen-1 G2/Perlecan IG3 Complex

Kvansakul, M., Hopf, M., Ries, A., Timpl, R., Hohenester, E.

(2001) EMBO J 20: 5342

Released	2001-11-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN (protein) NIDOGEN-1 (protein)
Unique Ligands	EPE, ZN