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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = PXL

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Escherichia coli (2)
	Homo sapiens (2)
	Mesorhizobium loti (2)
	Bacteroides thetaiotaomicron VPI-5482 (1)
	Bos taurus (1)
	Plasmodium falciparum 3D7 (1)
	Staphylococcus aureus (1)
	Staphylococcus aureus subsp. aureus Mu50 (1)

Taxonomy

	Bacteria (7)
	Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (1)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (2)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Artifacts (1)

AllSelected

1 to 11 of 11 Structures

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1TD2 \| pdb_00001td2	Download File View File

Crystal Structure of the PdxY Protein from Escherichia coli

Safo, M.K., Musayev, F.N., Hunt, S., di Salvo, M., Scarsdale, N., Schirch, V.

(2004) J Bacteriol 186: 8074-8082

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxamine kinase (protein)
Unique Ligands	PXL, SO4

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2DDW \| pdb_00002ddw	Download File View File

Crystal Structure of Pyridoxal Kinase from the Escherichia coli PdxK gene complexed with pyridoxal at 3.2 A resolution

Safo, M.K., Musayev, F.N., di Salvo, M.L., Hunt, S., Claude, J.B., Schirch, V.

(2006) J Bacteriol 188: 4542-4552

Released	2006-08-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine kinase (protein)
Unique Ligands	PXL

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2Z9W \| pdb_00002z9w	Download File View File

Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxal

Yoshikane, Y., Yokochi, N., Yamasaki, M., Mizutani, K., Ohnishi, K., Mikami, B., Hayashi, H., Yagi, T.

(2008) J Biological Chem 283: 1120-1127

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mesorhizobium loti
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	GOL, PXL, SO4

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2Z9X \| pdb_00002z9x	Download File View File

Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxyl-L-alanine

Yoshikane, Y., Yokochi, N., Yamasaki, M., Mizutani, K., Ohnishi, K., Mikami, B., Hayashi, H., Yagi, T.

(2008) J Biological Chem 283: 1120-1127

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Mesorhizobium loti
Macromolecule	Aspartate aminotransferase (protein)
Unique Ligands	ALA, CL, GOL, PXL, SO4

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3FHX \| pdb_00003fhx	Download File View File

Crystal structure of D235A mutant of human pyridoxal kinase

Safo, M.K., Gandhi, A.K., Musayev, F.N., Ghatge, M., Di Salvo, M.L., Schirch, V.

(2009) Biochem Biophys Res Commun 381: 12-15

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Pyridoxal kinase (protein)
Unique Ligands	ATP, MG, MPD, NA, PLP, PXL, SO4

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3MBH \| pdb_00003mbh	Download File View File

Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.00 A resolution (orthorhombic form with pyridoxal)

Joint Center for Structural Genomics (JCSG)

To be published

Released	2010-06-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Putative phosphomethylpyrimidine kinase (protein)
Unique Ligands	CL, PXL

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4C5L \| pdb_00004c5l	Download File View File

Structure of the pyridoxal kinase from Staphylococcus aureus in complex with pyridoxal

Nodwell, M., Alte, F., Sieber, S.A., Schneider, S.

(2014) J Am Chem Soc 136: 4992

Released	2014-03-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	PHOSPHOMETHYLPYRIMIDINE KINASE (protein)
Unique Ligands	PXL, SO4, UEG

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4C5N \| pdb_00004c5n	Download File View File

Structure of the pyridoxal kinase from Staphylococcus aureus in complex with AMP-PCP and pyridoxal

Nodwell, M., Alte, F., Sieber, S.A., Schneider, S.

(2014) J Am Chem Soc 136: 4992

Released	2014-03-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Staphylococcus aureus
Macromolecule	PHOSPHOMETHYLPYRIMIDINE KINASE (protein)
Unique Ligands	ACP, PXL, SO4, UEG

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6SU9 \| pdb_00006su9	Download File View File

Crystal structure of Plasmodium falciparum PdxK with ligands AMP-PNP and PL

Groves, M.R., Gao, K., Wang, W.

(2019) Crystals (Basel)

Released	2019-10-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Pyridoxal kinase (protein)
Unique Ligands	ANP, MG, PXL

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9CGR \| pdb_00009cgr	Download File View File

Structure of human MAIT A-F7 TCR in complex with human MR1-Pyridoxal

Awad, W., Rossjohn, R.

(2024) Proc Natl Acad Sci U S A 121: e2414792121-e2414792121

Released	2024-11-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Major histocompatibility complex class I-related gene protein (protein) TCR TRAV1-2 (protein) TCR TRBV 6-1 (protein)
Unique Ligands	ACY, CA, CL, GOL, PXL