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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Saccharomyces cerevisiae"

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Search Summary

This query matches 1,870 Structures.

Refinements

Structure Determination Methodology

experimental (1,870)

Scientific Name of Source Organism

	Homo sapiens (627)
	Bos taurus (321)
	Rattus norvegicus (309)
	Gallus gallus (271)
	Sus scrofa (258)
	synthetic construct (176)
	Mus musculus (134)
	Saccharomyces cerevisiae S288C (80)
	Saccharomyces cerevisiae (63)
	Escherichia coli (56)

More...

Taxonomy

	Eukaryota (1,463)
	Bacteria (247)
	other sequences (176)
	Riboviria (96)
	Archaea (48)
	Varidnaviria (22)
	Duplodnaviria (11)
	Monodnaviria (7)
	unclassified sequences (5)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (1,088)
	ELECTRON MICROSCOPY (775)
	SOLUTION NMR (4)
	ELECTRON CRYSTALLOGRAPHY (3)

Polymer Entity Type

	Protein (1,720)
	RNA (552)
	DNA (104)
	NA-hybrid (10)

Refinement Resolution (Å)

	1.0 - 1.5 (25)
	1.5 - 2.0 (161)
	2.0 - 2.5 (403)
	2.5 - 3.0 (464)
	3.0 - 3.5 (348)
	3.5 - 4.0 (230)
	4.0 - 4.5 (94)
	> 4.5 (141)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (11)
	2000 - 2004 (46)
	2005 - 2009 (123)
	2010 - 2014 (204)
	2015 - 2019 (471)
	2020 - 2024 (960)
	2025 - 2029 (53)

Enzyme Classification Name

	Hydrolases (1,046)
	Transferases (355)
	Translocases (43)
	Oxidoreductases (63)
	Isomerases (53)
	Ligases (66)
	Lyases (50)

Membrane Protein Annotation

	PDBTM (72)
	OPM (30)
	mpstruc (29)
	MemProtMD (13)

Symmetry Type

	Asymmetric (1,419)
	Cyclic (147)
	Dihedral (97)
	Helical (63)
	Tetrahedral (6)
	Icosahedral (4)

SCOP Classification

	Alpha and beta proteins (a/b) (418)
	Alpha and beta proteins (a+b) (297)
	Artifacts (223)
	All alpha proteins (218)
	All beta proteins (42)
	Multi-domain proteins (alpha and beta) (14)
	Coiled coil proteins (8)
	Small proteins (8)
	Low resolution protein structures (4)
	Peptides (4)

AllSelected

1 to 25 of 1,870 Structures

Page 1 of 75

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1A8R \| pdb_00001a8r	Download File View File

GTP CYCLOHYDROLASE I (H112S MUTANT) IN COMPLEX WITH GTP

Auerbach, G., Nar, H., Bracher, A., Bacher, A., Huber, R.

(2003) J Mol Biology 326: 503-516

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	GTP CYCLOHYDROLASE I (protein)
Unique Ligands	GTP

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1A9C \| pdb_00001a9c	Download File View File

GTP CYCLOHYDROLASE I (C110S MUTANT) IN COMPLEX WITH GTP

Auerbach, G., Nar, H., Bracher, A., Bacher, A., Huber, R.

To be published

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	GTP CYCLOHYDROLASE I (protein)
Unique Ligands	GTP

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1C1Y \| pdb_00001c1y	Download File View File

CRYSTAL STRUCTURE OF RAP.GMPPNP IN COMPLEX WITH THE RAS-BINDING-DOMAIN OF C-RAF1 KINASE (RAFRBD).

Nassar, N.

(1995) Nature 375: 554-560

Released	1999-08-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1 (protein) RAS-RELATED PROTEIN RAP-1A (protein)
Unique Ligands	CA, GTP, MG

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1C4K \| pdb_00001c4k	Download File View File

ORNITHINE DECARBOXYLASE MUTANT (GLY121TYR)

Vitali, J., Hackert, M.L.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1978-1985

Released	2000-02-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lactobacillus sp. 30A
Macromolecule	PROTEIN (ORNITHINE DECARBOXYLASE) (protein)
Unique Ligands	GTP, PLP

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1C80 \| pdb_00001c80	Download File View File

REGULATORY COMPLEX OF FRUCTOSE-2,6-BISPHOSPHATASE

Lee, Y.H., Olson, T.W., McClard, R.W., Witte, J.F., McFarlan, S.C., Banaszak, L.J., Levitt, D.G., Lange, A.J.

To be published

Released	2003-06-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rattus norvegicus
Macromolecule	FRUCTOSE-2,6-BISPHOSPHATASE (protein)
Unique Ligands	GTP, PO4

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1CKM \| pdb_00001ckm	Download File View File

STRUCTURE OF TWO DIFFERENT CONFORMATIONS OF MRNA CAPPING ENZYME IN COMPLEX WITH GTP

Hakansson, K., Doherty, A.J., Wigley, D.B.

(1997) Cell 89: 545-553

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	MRNA CAPPING ENZYME (protein)
Unique Ligands	GTP

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1CKN \| pdb_00001ckn	Download File View File

STRUCTURE OF GUANYLYLATED MRNA CAPPING ENZYME COMPLEXED WITH GTP

Hakansson, K., Doherty, A.J., Wigley, D.B.

(1997) Cell 89: 545-553

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	MRNA CAPPING ENZYME (protein)
Unique Ligands	GTP, MN, SO4

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1E96 \| pdb_00001e96	Download File View File

Structure of the Rac/p67phox complex

Lapouge, K., Smith, S.J.M., Walker, P.A., Gamblin, S.J., Smerdon, S.J., Rittinger, K.

(2000) Mol Cell 6: 899-907

Released	2000-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL CYTOSOL FACTOR 2 (NCF-2) TPR DOMAIN, RESIDUES 1-203 (protein) RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 (protein)
Unique Ligands	GTP, MG

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1FFX \| pdb_00001ffx	Download File View File

TUBULIN:STATHMIN-LIKE DOMAIN COMPLEX

Gigant, B., Martin-Barbey, C., Knossow, M.

(2000) Cell 102: 809-816

Released	2000-09-27
Method	X-RAY DIFFRACTION 3.95 Å
Organisms	Bos taurus Rattus norvegicus
Macromolecule	PROTEIN (STATHMIN-LIKE DOMAIN OF RB3) (protein) PROTEIN (TUBULIN) (protein)
Unique Ligands	GDP, GTP

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1FRW \| pdb_00001frw	Download File View File

STRUCTURE OF E. COLI MOBA WITH BOUND GTP AND MANGANESE

Lake, M.W., Temple, C.A., Rajagopalan, K.V., Schindelin, H.

(2000) J Biological Chem 275: 40211-40217

Released	2001-01-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN (protein)
Unique Ligands	ACT, GTP, MN, ZN

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1GWN \| pdb_00001gwn	Download File View File

The crystal structure of the core domain of RhoE/Rnd3 - a constitutively activated small G protein

Garavini, H., Riento, K., Phelan, J.P., McAlister, M.S.B., Ridley, A.J., Keep, N.H.

(2002) Biochemistry 41: 6303-6310

Released	2002-04-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Rho-related GTP-binding protein RhoE (protein)
Unique Ligands	GTP, MG

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1GX5 \| pdb_00001gx5	Download File View File

Hepatitis C Virus RNA Polymerase in Complex with GTP and Manganese

Bressanelli, S., Rey, F.A.

(2002) J Virol 76: 3482

Released	2002-04-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Hepatitis C virus (isolate BK)
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	GTP, MN

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1HC8 \| pdb_00001hc8	Download File View File

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Conn, G.L., Draper, D.E., Lattman, E.E., Gittis, A.G.

(2002) J Mol Biology 318: 963

Released	2002-05-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Geobacillus stearothermophilus
Macromolecule	RIBOSOMAL PROTEIN L11 (protein) 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN (nucleic acid)
Unique Ligands	K, MG, OS

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1HI0 \| pdb_00001hi0	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	GTP, MG, MN

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1IA0 \| pdb_00001ia0	Download File View File

KIF1A HEAD-MICROTUBULE COMPLEX STRUCTURE IN ATP-FORM

Kikkawa, M., Sablin, E.P., Okada, Y., Yajima, H., Fletterick, R.J., Hirokawa, N.

(2001) Nature 411: 439-445

Released	2002-03-22
Method	ELECTRON MICROSCOPY 15 Å
Organisms	Mus musculus Sus scrofa
Macromolecule	KINESIN-LIKE PROTEIN KIF1A (protein) TUBULIN ALPHA CHAIN (protein) TUBULIN BETA CHAIN (protein)
Unique Ligands	ACP, GDP, GTP, MG, TXL

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1J2J \| pdb_00001j2j	Download File View File

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein) ADP-ribosylation factor binding protein GGA1 (protein)
Unique Ligands	GTP, IOD, MG

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1JFF \| pdb_00001jff	Download File View File

Refined structure of alpha-beta tubulin from zinc-induced sheets stabilized with taxol

Lowe, J., Li, H., Downing, K.H., Nogales, E.

(2001) J Mol Biology 313: 1045-1057

Released	2001-09-19
Method	ELECTRON CRYSTALLOGRAPHY 3.5 Å
Organisms	Bos taurus
Macromolecule	tubulin alpha chain (protein) tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG, TA1, ZN

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1JLR \| pdb_00001jlr	Download File View File

STRUCTURE OF THE URACIL PHOSPHORIBOSYLTRANSFERASE GTP COMPLEX 2 MUTANT C128V

Schumacher, M.A., Bashor, C.J., Otsu, K., Zu, S., Parry, R., Ulmman, B., Brennan, R.G.

(2002) Proc Natl Acad Sci U S A 99: 78-83

Released	2002-01-10
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Toxoplasma gondii
Macromolecule	Uracil Phosphoribosyltransferase (protein)
Unique Ligands	GTP, PO4

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1KSG \| pdb_00001ksg	Download File View File

Complex of Arl2 and PDE delta, Crystal Form 1

Hanzal-Bayer, M., Renault, L., Roversi, P., Wittinghofer, A., Hillig, R.C.

(2002) EMBO J 21: 2095-2106

Released	2002-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT (protein) arf-like protein 2 (protein)
Unique Ligands	GTP, MG

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1KSJ \| pdb_00001ksj	Download File View File

Complex of Arl2 and PDE delta, Crystal Form 2 (SeMet)

Hanzal-Bayer, M., Renault, L., Roversi, P., Wittinghofer, A., Hillig, R.C.

(2002) EMBO J 21: 2095-2106

Released	2002-05-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT (protein) arf-like protein 2 (protein)
Unique Ligands	BME, GDP, GTP, MG, PO4

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1L2X \| pdb_00001l2x	Download File View File

Atomic Resolution Crystal Structure of a Viral RNA Pseudoknot

Egli, M., Minasov, G., Su, L., Rich, A.

(2002) Proc Natl Acad Sci U S A 99: 4302-4307

Released	2002-03-22
Method	X-RAY DIFFRACTION 1.25 Å
Macromolecule	RNA pseudoknot (nucleic acid)
Unique Ligands	K, MG, NA

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1L3D \| pdb_00001l3d	Download File View File

Low Resolution Crystal Structure of a Viral RNA Pseudoknot

Egli, M., Minasov, G., Su, L., Rich, A.

(2002) Proc Natl Acad Sci U S A 99: 4302-4307

Released	2002-03-22
Method	X-RAY DIFFRACTION 2.85 Å
Macromolecule	RNA pseudoknot (nucleic acid)

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1LOO \| pdb_00001loo	Download File View File

Crystal Structure of the Mouse-Muscle Adenylosuccinate Synthetase Ligated with GTP

Iancu, C.V., Borza, T., Fromm, H.J., Honzatko, R.B.

(2002) J Biological Chem 277: 26779-26787

Released	2002-08-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	adenylosuccinate synthetase (protein)
Unique Ligands	GTP

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1M5K \| pdb_00001m5k	Download File View File

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Rupert, P.B., Ferre-D'Amare, A.R.

(2002) Science 298: 1421-1424

Released	2002-08-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A) (protein) RNA HAIRPIN RIBOZYME (nucleic acid) RNA INHIBITOR SUBSTRATE (nucleic acid)
Unique Ligands	CA, CL