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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "JW2496"

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Search Summary

This query matches 50 Structures.

Refinements

Structure Determination Methodology

experimental (50)

Scientific Name of Source Organism

	Escherichia coli K-12 (31)
	Escherichia coli (22)
	synthetic construct (7)
	Escherichia coli O157:H7 (3)
	Escherichia coli O157 (2)
	Homo sapiens (2)
	Photorhabdus (2)
	Photorhabdus heterorhabditis (2)
	Escherichia coli 0.1288 (1)
	Escherichia coli BL21(DE3) (1)

More...

Taxonomy

	Bacteria (50)
	other sequences (7)
	Eukaryota (2)

Experimental Method

	ELECTRON MICROSCOPY (38)
	X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (50)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (9)
	3.0 - 3.5 (15)
	3.5 - 4.0 (9)
	4.0 - 4.5 (8)
	> 4.5 (4)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (4)
	2020 - 2024 (33)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (11)
	Isomerases (10)

Membrane Protein Annotation

	PDBTM (35)
	mpstruc (26)
	OPM (25)
	MemProtMD (20)

Symmetry Type

Asymmetric (50)

SCOP Classification

Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 50 Structures

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3P1L \| pdb_00003p1l	Download File View File

Crystal structure of Escherichia coli BamB, a lipoprotein component of the beta-barrel assembly machinery complex, native crystals.

Kim, K.H., Paetzel, M.

(2011) J Mol Biology 406: 667-678

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein yfgL (protein)
Unique Ligands	NA

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3PRW \| pdb_00003prw	Download File View File

Crystal structure of the lipoprotein BamB

Heuck, A., Clausen, T.

(2011) J Mol Biology 406: 659-666

Released	2011-01-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein yfgL (protein)

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3Q7M \| pdb_00003q7m	Download File View File

The crystal structure of BamB from the BAM complex in spacegroup I222

Noinaj, N., Fairman, J.W., Buchanan, S.K.

(2011) J Mol Biology 407: 248-260

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Escherichia coli
Macromolecule	Lipoprotein yfgL (protein)

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3Q7N \| pdb_00003q7n	Download File View File

The crystal structure of BamB from the BAM complex in spacegroup P212121

Noinaj, N., Fairman, J.W., Buchanan, S.K.

(2011) J Mol Biology 407: 248-260

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.772 Å
Organisms	Escherichia coli
Macromolecule	Lipoprotein yfgL (protein)

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3Q7O \| pdb_00003q7o	Download File View File

The crystal structure of BamB from the BAM complex in spacegroup P213

Noinaj, N., Fairman, J.W., Buchanan, S.K.

(2011) J Mol Biology 407: 248-260

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.091 Å
Organisms	Escherichia coli
Macromolecule	Lipoprotein yfgL (protein)

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4PK1 \| pdb_00004pk1	Download File View File

Structure of BamB fused to a BamA POTRA domain fragment

Jansen, K.B., Sousa, M.C.

(2015) J Biological Chem 290: 2126-2136

Released	2014-12-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Chimera protein of Outer membrane protein assembly factors BamA and BamB (protein)

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4XGA \| pdb_00004xga	Download File View File

Crystal structure of BamB and BamA P3-5 complex from E.coli

Chen, Z., Zhan, L.H., Dong, C., Gao, Z.Q., Dong, Y.H.

(2016) Acta Crystallogr D Struct Biol 72: 236-244

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein)
Unique Ligands	CA

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5AYW \| pdb_00005ayw	Download File View File

Structure of a membrane complex

Huang, Y., Han, L., Zheng, J.

(2016) Nat Struct Mol Biol 23: 192-196

Released	2016-02-24
Method	X-RAY DIFFRACTION 3.555 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5D0O \| pdb_00005d0o	Download File View File

BamABCDE complex, outer membrane beta barrel assembly machinery entire complex

Gu, Y., Paterson, N., Zeng, Y., Dong, H., Wang, W., Dong, C.

(2016) Nature 531: 47-52

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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5LJO \| pdb_00005ljo	Download File View File

E. coli BAM complex (BamABCDE) by cryoEM

Iadanza, M.G., Ranson, N.A., Radford, S.E., Higgins, A.J., Schffrin, B., Calabrese, A.N., Ashcroft, A.E., Brockwell, D.J.

(2016) Nat Commun 7: 12865-12865

Released	2016-10-12
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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6LYQ \| pdb_00006lyq	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-06
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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6LYR \| pdb_00006lyr	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-06
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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6LYS \| pdb_00006lys	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-13
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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6LYU \| pdb_00006lyu	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-13
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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6V05 \| pdb_00006v05	Download File View File

Cryo-EM structure of a substrate-engaged Bam complex

Tomasek, D., Rawson, S., Lee, J., Wzorek, J.S., Harrison, S.C., Li, Z., Kahne, D.

(2020) Nature 583: 473-478

Released	2020-06-10
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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7BNQ \| pdb_00007bnq	Download File View File

Lateral-closed conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM

Haysom, S.F.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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7NBX \| pdb_00007nbx	Download File View File

Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM

Haysom, S.F.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

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7NCS \| pdb_00007ncs	Download File View File

Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) bound by a bactericidal Fab fragment

Haysom, S.F., Machin, J.M.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 7.1 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Unique protein chains: 7

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7ND0 \| pdb_00007nd0	Download File View File

lateral-open conformation of the wild-type BAM complex (BamABCDE) bound to a bactericidal Fab fragment

Iadanza, M.G., Haysom, S.H.

(2021) Nat Commun 12: 4174-4174

Released	2021-06-02
Method	ELECTRON MICROSCOPY 5.2 Å
Organisms	Escherichia coli K-12 Homo sapiens
Macromolecule	Unique protein chains: 7

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7NRI \| pdb_00007nri	Download File View File

Structure of the darobactin-bound E. coli BAM complex (BamABCDE)

Jakob, R.P., Kaur, H., Marzinek, J.K., Green, R., Imai, Y., Bolla, J., Robinson, C., Bond, P.J., Lewis, K., Maier, T., Hiller, S.

(2021) Nature 593: 125-129

Released	2021-04-21
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Unique protein chains: 6

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7R1W \| pdb_00007r1w	Download File View File

E. coli BAM complex (BamABCDE) bound to dynobactin A

Jakob, R.P., Hiller, S., Maier, T.

(2022) Nat Microbiol 7: 1661-1672

Released	2022-09-28
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli K-12 Photorhabdus australis
Macromolecule	Unique protein chains: 6

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7TTC \| pdb_00007ttc	Download File View File

BamABCDE bound to substrate EspP

Doyle, M.T., Jimah, J.R., Dowdy, T., Ohlemacher, S.I., Larion, M., Hinshaw, J.E., Bernstein, H.D.

(2022) Cell 185: 1143

Released	2022-03-30
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 6
Unique Ligands	K33

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7YE4 \| pdb_00007ye4	Download File View File

BAM-EspP complex structure with BamA-G431C and G781C/EspP-N1293C and A1043C mutations in nanodisc

Shen, C., Chang, S., Luo, Q., Zhang, Z., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhang, X., Tang, X., Dong, H.

(2023) Nature 617: 185-193

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Unique protein chains: 6

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7YE6 \| pdb_00007ye6	Download File View File

BAM-EspP complex structure with BamA-N427C/EspP-R1297C mutations in nanodisc

Shen, C., Chang, S., Luo, Q., Zhang, Z., Luo, B., Lu, G., Zhu, X., Wei, X., Dong, C., Zhang, X., Tang, X., Dong, H.

(2023) Nature 617: 185-193

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli K-12 Escherichia coli O157:H7
Macromolecule	Unique protein chains: 6

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8ADG \| pdb_00008adg	Download File View File

Cryo-EM structure of Darobactin 22 bound BAM complex

Yuan, B., Marlovits, T.C.

(2023) Angew Chem Int Ed Engl 62: e202214094-e202214094

Released	2023-01-11
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Escherichia coli Escherichia coli K-12 synthetic construct
Macromolecule	Unique protein chains: 6

1 to 25 of 50 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3P1L | pdb_00003p1l

3PRW | pdb_00003prw

3Q7M | pdb_00003q7m

3Q7N | pdb_00003q7n

3Q7O | pdb_00003q7o

4PK1 | pdb_00004pk1

4XGA | pdb_00004xga

5AYW | pdb_00005ayw

5D0O | pdb_00005d0o

5LJO | pdb_00005ljo

6LYQ | pdb_00006lyq

6LYR | pdb_00006lyr

6LYS | pdb_00006lys

6LYU | pdb_00006lyu

6V05 | pdb_00006v05

7BNQ | pdb_00007bnq

7NBX | pdb_00007nbx

7NCS | pdb_00007ncs

7ND0 | pdb_00007nd0

7NRI | pdb_00007nri

7R1W | pdb_00007r1w

7TTC | pdb_00007ttc

7YE4 | pdb_00007ye4

7YE6 | pdb_00007ye6

8ADG | pdb_00008adg