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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "TRS23"

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (7)
	Drosophila melanogaster (4)
	Saccharomyces cerevisiae (2)

Taxonomy

Eukaryota (13)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	3.5 - 4.0 (5)
	4.0 - 4.5 (5)
	> 4.5 (3)

Release Date

	2005 - 2009 (1)
	2020 - 2024 (12)

Symmetry Type

	Asymmetric (10)
	Cyclic (3)

SCOP Classification

Alpha and beta proteins (a/b) (1)

AllSelected

1 to 13 of 13 Structures

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3CUE \| pdb_00003cue	Download File View File

Crystal structure of a TRAPP subassembly activating the Rab Ypt1p

Cai, Y., Reinisch, K.M.

(2008) Cell 133: 1202-1213

Released	2008-07-08
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GTP-binding protein YPT1 (protein) Transport protein particle 18 kDa subunit (protein) Transport protein particle 22 kDa subunit (protein) Transport protein particle 23 kDa subunit (protein) Transport protein particle 31 kDa subunit (protein)
Unique Ligands	PLM

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7B6D \| pdb_00007b6d	Download File View File

Drosophila melanogaster TRAPPCore (C1, C2, C2L, C3a/b, C4, C5, C6 subunits)

Galindo, A., Munro, S., Planelles-Herrero, V.J., Degliesposti, G.

(2021) EMBO J 40: e107608-e107608

Released	2021-06-09
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Drosophila melanogaster
Macromolecule	Unique protein chains: 7

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7B6R \| pdb_00007b6r	Download File View File

Drosophila melanogaster TRAPPIII partial complex: core plus C8 and C11 attached region

Galindo, A., Munro, S., Planelles-Herrero, V.J., Degliesposti, G.

(2021) EMBO J 40: e107608-e107608

Released	2021-06-09
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Unique protein chains: 9

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7B6X \| pdb_00007b6x	Download File View File

TRAPPCore from the MiniTRAPPIII complex

Galindo, A., Munro, S., Planelles-Herrero, V.J.

To be published

Released	2022-01-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Drosophila melanogaster
Macromolecule	Unique protein chains: 7

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7B70 \| pdb_00007b70	Download File View File

TRAPPCore plus C8 (355-596) and C11 (1-718) from MiniTRAPPIII

Galindo, A., Munro, S., Planelles-Herrero, V.J.

(2021) EMBO J 40: e107608-e107608

Released	2021-06-09
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Drosophila melanogaster
Macromolecule	Unique protein chains: 9

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7E2C \| pdb_00007e2c	Download File View File

Monomer of TRAPPII (open)

Sui, S.F., Sun, S., Mi, C.C.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 4.18 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 10

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7E2D \| pdb_00007e2d	Download File View File

Monomer of TRAPPII (Closed)

Sui, S.F., Sun, S., Mi, C.C.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 3.71 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 10

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7E8S \| pdb_00007e8s	Download File View File

Intact TRAPPII (state I).

Mi, C.C., Sui, S.F.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 4.36 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 10

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7E8T \| pdb_00007e8t	Download File View File

Monomer of Ypt32-TRAPPII

Mi, C.C., Sui, S.F.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 11

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7E93 \| pdb_00007e93	Download File View File

Intact TRAPPII (state III).

Mi, C.C., Sui, S.F.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 6.54 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 10

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7E94 \| pdb_00007e94	Download File View File

Intact TRAPPII (State II)

Mi, C.C., Sui, S.F.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 4.67 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 10

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7EA3 \| pdb_00007ea3	Download File View File

Intact Ypt32-TRAPPII (dimer).

Mi, C.C., Sui, S.F.

(2022) Sci Adv 8: eabi5603-eabi5603

Released	2022-02-09
Method	ELECTRON MICROSCOPY 4.31 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 11

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7KMT \| pdb_00007kmt	Download File View File

Structure of the yeast TRAPPIII-Ypt1(Rab1) complex

Joiner, A.M.N., Phillips, B.P., Miller, E.A., Fromme, J.C.

(2021) EMBO J 40: e107607-e107607

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 8
Unique Ligands	PLM

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3CUE | pdb_00003cue

Crystal structure of a TRAPP subassembly activating the Rab Ypt1p

7B6D | pdb_00007b6d

Drosophila melanogaster TRAPPCore (C1, C2, C2L, C3a/b, C4, C5, C6 subunits)

7B6R | pdb_00007b6r

Drosophila melanogaster TRAPPIII partial complex: core plus C8 and C11 attached region

7B6X | pdb_00007b6x

TRAPPCore from the MiniTRAPPIII complex

7B70 | pdb_00007b70

TRAPPCore plus C8 (355-596) and C11 (1-718) from MiniTRAPPIII

7E2C | pdb_00007e2c

Monomer of TRAPPII (open)

7E2D | pdb_00007e2d

Monomer of TRAPPII (Closed)

7E8S | pdb_00007e8s

Intact TRAPPII (state I).

7E8T | pdb_00007e8t

Monomer of Ypt32-TRAPPII

7E93 | pdb_00007e93

Intact TRAPPII (state III).

7E94 | pdb_00007e94

Intact TRAPPII (State II)

7EA3 | pdb_00007ea3

Intact Ypt32-TRAPPII (dimer).

7KMT | pdb_00007kmt

Structure of the yeast TRAPPIII-Ypt1(Rab1) complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

3CUE | pdb_00003cue

7B6D | pdb_00007b6d

7B6R | pdb_00007b6r

7B6X | pdb_00007b6x

7B70 | pdb_00007b70

7E2C | pdb_00007e2c

7E2D | pdb_00007e2d

7E8S | pdb_00007e8s

7E8T | pdb_00007e8t

7E93 | pdb_00007e93

7E94 | pdb_00007e94

7EA3 | pdb_00007ea3

7KMT | pdb_00007kmt