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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Achromobacter denitrificans"

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This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Achromobacter denitrificans (7)
	Achromobacter denitrificans NBRC 15125 (2)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

	Protein (9)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (4)
	2015 - 2019 (1)
	2020 - 2024 (3)

Enzyme Classification Name

Lyases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (3)

SCOP Classification

All beta proteins (5)

AllSelected

1 to 9 of 9 Structures

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1A4A \| pdb_00001a4a	Download File View File

AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 6.5 CRYSTAL FORM, DATA COLLECTED AT 16 DEGREES CELSIUS

Messerschmidt, A., Prade, L.

(1998) Proc Natl Acad Sci U S A 95: 3443-3448

Released	1998-04-29
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Achromobacter denitrificans
Macromolecule	AZURIN (protein)
Unique Ligands	CU

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1A4B \| pdb_00001a4b	Download File View File

AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 6.5 CRYSTAL FORM, DATA COLLECTED AT-180 DEGREES CELSIUS

Messerschmidt, A., Prade, L.

(1998) Proc Natl Acad Sci U S A 95: 3443-3448

Released	1998-04-29
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Achromobacter denitrificans
Macromolecule	AZURIN (protein)
Unique Ligands	CU, SO4

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1A4C \| pdb_00001a4c	Download File View File

AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 3.5 CRYSTAL FORM, DATA COLLECTED AT-180 DEGREES CELSIUS

Messerschmidt, A., Prade, L.

(1998) Proc Natl Acad Sci U S A 95: 3443-3448

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Achromobacter denitrificans
Macromolecule	AZURIN (protein)
Unique Ligands	CU, NO3, SO4

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1AIZ \| pdb_00001aiz	Download File View File

STRUCTURE OF APO-AZURIN FROM ALCALIGENES DENITRIFICANS AT 1.8 ANGSTROMS RESOLUTION

Baker, E.N., Anderson, B.F., Blackwell, K.A.

(1993) Acta Crystallogr D Biol Crystallogr 49: 331-343

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Achromobacter denitrificans
Macromolecule	AZURIN (protein)
Unique Ligands	CD, SO4

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1URI \| pdb_00001uri	Download File View File

AZURIN MUTANT WITH MET 121 REPLACED BY GLN

Romero, A., Nar, H., Huber, R., Messerschmidt, A.

(1993) J Mol Biology 229: 1007-1021

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Achromobacter denitrificans
Macromolecule	AZURIN (protein)
Unique Ligands	CU, SO4

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6FI2 \| pdb_00006fi2	Download File View File

VexL: A periplasmic depolymerase provides new insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides

Naismith, J.H., McMahon, S.A., Le Bas, A., Liston, S.D., Whitfield, C.

(2018) Proc Natl Acad Sci U S A 115: E4870-E4879

Released	2018-05-02
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Achromobacter denitrificans
Macromolecule	VexL (protein)
Unique Ligands	MLI
Unique branched monosaccharides	DJB, DJE

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9JPJ \| pdb_00009jpj	Download File View File

Crystal structure of DhdR in complex with DNA

Sun, P., Wang, B.

To be published

Released	2024-11-06
Method	X-RAY DIFFRACTION 3.72 Å
Organisms	Achromobacter denitrificans NBRC 15125
Macromolecule	Pyruvate dehydrogenase complex repressor (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	ZN

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9JPK \| pdb_00009jpk	Download File View File

Crystal structure of DhdR inducer binding domain

Sun, P., Wang, B.

To be published

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Achromobacter denitrificans
Macromolecule	Pyruvate dehydrogenase complex repressor (protein)
Unique Ligands	ZN

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9JPL \| pdb_00009jpl	Download File View File

Crystal structure of DhdR inducer binding domain in complex with inducer

Sun, P., Wang, B.

To be published

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Achromobacter denitrificans NBRC 15125
Macromolecule	Pyruvate dehydrogenase complex repressor (protein)
Unique Ligands	2HG, CL, ZN

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A4A | pdb_00001a4a

AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 6.5 CRYSTAL FORM, DATA COLLECTED AT 16 DEGREES CELSIUS

1A4B | pdb_00001a4b

AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 6.5 CRYSTAL FORM, DATA COLLECTED AT-180 DEGREES CELSIUS

1A4C | pdb_00001a4c

AZURIN MUTANT WITH MET 121 REPLACED BY HIS, PH 3.5 CRYSTAL FORM, DATA COLLECTED AT-180 DEGREES CELSIUS

1AIZ | pdb_00001aiz

STRUCTURE OF APO-AZURIN FROM ALCALIGENES DENITRIFICANS AT 1.8 ANGSTROMS RESOLUTION

1URI | pdb_00001uri

AZURIN MUTANT WITH MET 121 REPLACED BY GLN

6FI2 | pdb_00006fi2

VexL: A periplasmic depolymerase provides new insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides

9JPJ | pdb_00009jpj

Crystal structure of DhdR in complex with DNA

9JPK | pdb_00009jpk

Crystal structure of DhdR inducer binding domain

9JPL | pdb_00009jpl

Crystal structure of DhdR inducer binding domain in complex with inducer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A4A | pdb_00001a4a

1A4B | pdb_00001a4b

1A4C | pdb_00001a4c

1AIZ | pdb_00001aiz

1URI | pdb_00001uri

6FI2 | pdb_00006fi2

9JPJ | pdb_00009jpj

9JPK | pdb_00009jpk

9JPL | pdb_00009jpl