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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Brevundimonas diminuta"

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Search Summary

This query matches 85 Structures.

Refinements

Structure Determination Methodology

experimental (85)

Scientific Name of Source Organism

Brevundimonas diminuta (85)

Taxonomy

Bacteria (85)

Experimental Method

	X-RAY DIFFRACTION (84)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (85)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (56)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (11)
	2005 - 2009 (7)
	2010 - 2014 (8)
	2015 - 2019 (39)
	2020 - 2024 (17)

Enzyme Classification Name

Hydrolases (60)

Symmetry Type

	Cyclic (79)
	Asymmetric (6)

SCOP Classification

	Alpha and beta proteins (a/b) (63)
	Alpha and beta proteins (a+b) (4)
	Artifacts (3)

AllSelected

1 to 25 of 85 Structures

Page 1 of 4

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1DPM \| pdb_00001dpm	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE WITH BOUND SUBSTRATE ANALOG DIETHYL 4-METHYLBENZYLPHOSPHONATE

Vanhooke, J.L., Benning, M.M., Raushel, F.M., Holden, H.M.

(1996) Biochemistry 35: 6020-6025

Released	1997-08-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	EBP, FMT, ZN

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1EYW \| pdb_00001eyw	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE WITH BOUND SUBSTRATE ANALOG TRIETHYLPHOSPHATE

Holden, H.M., Benning, M.M., Raushel, F.M., Hong, S.-B.

(2000) J Biological Chem 275: 30556-30560

Released	2000-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	PEL, TEN, ZN

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1EZ2 \| pdb_00001ez2	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE WITH BOUND SUBSTRATE ANALOG DIISOPROPYLMETHYL PHOSPHONATE.

Holden, H.M., Benning, M.M., Raushel, F.M., Hong, S.-B.

(2000) J Biological Chem 275: 30556-30560

Released	2000-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	DII, ZN

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1FM2 \| pdb_00001fm2	Download File View File

THE 2 ANGSTROM CRYSTAL STRUCTURE OF CEPHALOSPORIN ACYLASE

Kim, Y., Yoon, K.H., Khang, Y., Turley, S., Hol, W.G.J.

(2000) Structure 8: 1059-1068

Released	2001-08-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Brevundimonas diminuta
Macromolecule	GLUTARYL 7-AMINOCEPHALOSPORANIC ACID ACYLASE (protein)

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1HZY \| pdb_00001hzy	Download File View File

HIGH RESOLUTION STRUCTURE OF THE ZINC-CONTAINING PHOSPHOTRIESTERASE FROM PSEUDOMONAS DIMINUTA

Holden, H.M., Benning, M.M., Raushel, F.M., Shim, H.

(2001) Biochemistry 40: 2712-2722

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	EDO, FMT, NA, PEL, ZN

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1I0B \| pdb_00001i0b	Download File View File

HIGH RESOLUTION STRUCTURE OF THE MANGANESE-CONTAINING PHOSPHOTRIESTERASE FROM PSEUDOMONAS DIMINUTA

Holden, H.M., Benning, M.M., Raushel, F.M., Shim, H.

(2001) Biochemistry 40: 2712-2722

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	EDO, FMT, MN, NA, PEL

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1I0D \| pdb_00001i0d	Download File View File

HIGH RESOLUTION STRUCTURE OF THE ZINC/CADMIUM-CONTAINING PHOSPHOTRIESTERASE FROM PSEUDOMONAS DIMINUTA

Holden, H.M., Benning, M.M., Raushel, F.M., Shim, H.

(2001) Biochemistry 40: 2712-2722

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	CD, EDO, FMT, NA, PEL, ZN

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1JGM \| pdb_00001jgm	Download File View File

High Resolution Structure of the Cadmium-containing Phosphotriesterase from Pseudomonas diminuta

Benning, M.M., Shim, H., Raushel, F.M., Holden, H.M.

(2001) Biochemistry 40: 2712-2722

Released	2001-07-04
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Brevundimonas diminuta
Macromolecule	Phosphotriesterase (protein)
Unique Ligands	CD, EDO, NA, PEL

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1JVZ \| pdb_00001jvz	Download File View File

Structure of cephalosporin acylase in complex with glutaryl-7-aminocephalosporanic acid

Kim, Y., Hol, W.G.J.

(2001) Chem Biol 8: 1253-1264

Released	2002-09-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Brevundimonas diminuta
Macromolecule	cephalosporin acylase alpha chain (protein) cephalosporin acylase beta chain (protein)
Unique Ligands	CEN

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1JW0 \| pdb_00001jw0	Download File View File

Structure of cephalosporin acylase in complex with glutarate

Kim, Y., Hol, W.G.J.

(2001) Chem Biol 8: 1253-1264

Released	2002-09-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevundimonas diminuta
Macromolecule	cephalosporin acylase alpha chain (protein) cephalosporin acylase beta chain (protein)
Unique Ligands	GUA

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1KEH \| pdb_00001keh	Download File View File

Precursor structure of cephalosporin acylase

Kim, Y., Kim, S.

(2002) J Biological Chem 277: 2823-2829

Released	2002-05-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevundimonas diminuta
Macromolecule	precursor of cephalosporin acylase (protein)

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1PSC \| pdb_00001psc	Download File View File

PHOSPHOTRIESTERASE FROM PSEUDOMONAS DIMINUTA

Benning, M.M., Holden, H.M.

(1995) Biochemistry 34: 7973-7978

Released	1997-04-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)
Unique Ligands	CD, EBP, FMT

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1PTA \| pdb_00001pta	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PHOSPHOTRIESTERASE: AN ENZYME CAPABLE OF DETOXIFYING ORGANOPHOSPHATE NERVE AGENTS

Benning, M., Holden, H.M.

(1994) Biochemistry 33: 15001-15007

Released	1995-12-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brevundimonas diminuta
Macromolecule	PHOSPHOTRIESTERASE (protein)

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1QW7 \| pdb_00001qw7	Download File View File

Structure of an Engineered Organophosphorous Hydrolase with Increased Activity Toward Hydrolysis of Phosphothiolate Bonds

Mesecar, A.D., Grimsley, J.K., Holton, T., Wild, J.R.

(2005) Arch Biochem Biophys 442: 169-179

Released	2004-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	CO, EBP, NA

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2O4M \| pdb_00002o4m	Download File View File

Structure of Phosphotriesterase mutant I106G/F132G/H257Y

Kim, J., Ramagopal, U.A., Tsai, P., Raushel, F.M., Almo, S.C.

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	ACY, CAC, GOL, ZN

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2O4Q \| pdb_00002o4q	Download File View File

Structure of Phosphotriesterase mutant G60A

Kim, J., Ramagopal, U.A., Tsai, P.C., Raushel, F.M., Almo, S.C.

(2008) Biochemistry 47: 9497-9504

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	CAC, ZN

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2OB3 \| pdb_00002ob3	Download File View File

Structure of Phosphotriesterase mutant H257Y/L303T

Kim, J., Ramagopal, U.A., Tsai, P., Raushel, F.M., Almo, S.C.

To be published

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.04 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	BTB, ZN

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2OQL \| pdb_00002oql	Download File View File

Structure of Phosphotriesterase mutant H254Q/H257F

Kim, J., Tsai, P., Raushel, F.M., Almo, S.C.

To be published

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	BTB, GOL, ZN

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3CAK \| pdb_00003cak	Download File View File

X-ray structure of WT PTE with ethyl phosphate

Kim, J., Tsai, P.-C., Almo, S.C., Raushel, F.M.

(2008) Biochemistry 47: 9497-9504

Released	2008-10-21
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	BTB, CO, DPF, EFS