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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Caldalkalibacillus thermarum TA2.A1"

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This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

Caldalkalibacillus thermarum TA2.A1 (9)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (8)

Enzyme Classification Name

	Hydrolases (2)
	Translocases (2)

Membrane Protein Annotation

mpstruc (2)

Symmetry Type

	Cyclic (7)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All alpha proteins (2)
	All beta proteins (2)

AllSelected

1 to 9 of 9 Structures

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4NWZ \| pdb_00004nwz	Download File View File

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.5A resolution

Nakatani, Y., Heikal, A., Lott, J.S., Sazanov, L.A., Baker, E.N., Cook, G.M.

(2014) Mol Microbiol 91: 950-964

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD

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5HKK \| pdb_00005hkk	Download File View File

Caldalaklibacillus thermarum F1-ATPase (wild type)

Ferguson, S.A., Cook, G.M., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2016) Proc Natl Acad Sci U S A 113: 10860-10865

Released	2016-09-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	ATP synthase epsilon chain (protein) ATP synthase gamma chain (protein) ATP synthase subunit alpha (protein) ATP synthase subunit beta (protein)
Unique Ligands	ADP, ATP, GOL, MG, PO4

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5IK2 \| pdb_00005ik2	Download File View File

Caldalaklibacillus thermarum F1-ATPase (epsilon mutant)

Ferguson, S.A., Cook, G.M., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

(2016) Proc Natl Acad Sci U S A 113: 10860-10865

Released	2016-09-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	ATP synthase epsilon chain (protein) ATP synthase gamma chain (protein) ATP synthase subunit alpha (protein) ATP synthase subunit beta (protein)
Unique Ligands	ADP, GOL, MG, PO4

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5KMP \| pdb_00005kmp	Download File View File

The structure of G164E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum

Cook, G.M., Aragao, D., Nakatani, Y.

(2017) Sci Rep 7: 40165-40165

Released	2017-01-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD

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5KMQ \| pdb_00005kmq	Download File View File

The structure of I379E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum

Cook, G.M., Aragao, D., Nakatani, Y.

(2017) Sci Rep 7: 40165-40165

Released	2017-01-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD

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5KMR \| pdb_00005kmr	Download File View File

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 3.0 angstrom resolution.

Cook, G.M., Aragao, D., Nakatani, Y.

(2017) Sci Rep 7: 40165-40165

Released	2017-01-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD, NAD

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5KMS \| pdb_00005kms	Download File View File

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 2.5 angstrom resolution.

Cook, G.M., Aragao, D., Nakatani, Y.

(2017) Sci Rep 7: 40165-40165

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD, NAD

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5WED \| pdb_00005wed	Download File View File

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.15A resolution

Nakatani, Y., Aragao, D., Cook, G.M.

(2017) Acta Crystallogr F Struct Biol Commun 73: 541-549

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD

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6BDO \| pdb_00006bdo	Download File View File

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with a quinone inhibitor HQNO at 2.8A resolution

Cook, G.M., Aragao, D., Nakatani, Y.

(2018) Biochim Biophys Acta 1859: 482-490

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Caldalkalibacillus thermarum TA2.A1
Macromolecule	FAD-dependent pyridine nucleotide-disulfide oxidoreductase (protein)
Unique Ligands	FAD, HQO

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4NWZ | pdb_00004nwz

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.5A resolution

5HKK | pdb_00005hkk

Caldalaklibacillus thermarum F1-ATPase (wild type)

5IK2 | pdb_00005ik2

Caldalaklibacillus thermarum F1-ATPase (epsilon mutant)

5KMP | pdb_00005kmp

The structure of G164E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum

5KMQ | pdb_00005kmq

The structure of I379E variant of type II NADH dehydrogenase from Caldalkalibacillus thermarum

5KMR | pdb_00005kmr

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 3.0 angstrom resolution.

5KMS | pdb_00005kms

The structure of type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with NAD+ at 2.5 angstrom resolution.

5WED | pdb_00005wed

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.15A resolution

6BDO | pdb_00006bdo

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum complexed with a quinone inhibitor HQNO at 2.8A resolution

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4NWZ | pdb_00004nwz

5HKK | pdb_00005hkk

5IK2 | pdb_00005ik2

5KMP | pdb_00005kmp

5KMQ | pdb_00005kmq

5KMR | pdb_00005kmr

5KMS | pdb_00005kms

5WED | pdb_00005wed

6BDO | pdb_00006bdo