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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Corynebacterium diphtheriae"

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Search Summary

This query matches 132 Structures.

Refinements

Structure Determination Methodology

experimental (132)

Scientific Name of Source Organism

	Corynebacterium diphtheriae (100)
	Corynebacterium diphtheriae NCTC 13129 (32)
	Corynebacterium diphtheriae C7 (beta) (2)
	Homo sapiens (2)
	Aequorea victoria (1)

Taxonomy

	Bacteria (132)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (123)
	SOLUTION NMR (7)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (132)
	DNA (4)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (46)
	2.0 - 2.5 (41)
	2.5 - 3.0 (19)
	3.0 - 3.5 (12)

Release Date

	1995 - 1999 (10)
	2000 - 2004 (16)
	2005 - 2009 (31)
	2010 - 2014 (18)
	2015 - 2019 (21)
	2020 - 2024 (32)
	2025 - 2029 (4)

Enzyme Classification Name

	Oxidoreductases (29)
	Transferases (15)
	Isomerases (5)
	Hydrolases (2)
	Lyases (1)

Membrane Protein Annotation

	OPM (6)
	PDBTM (6)

Symmetry Type

	Asymmetric (67)
	Cyclic (65)
	Dihedral (5)
	Octahedral (1)

SCOP Classification

	All alpha proteins (37)
	All beta proteins (29)
	Alpha and beta proteins (a+b) (14)
	Membrane and cell surface proteins and peptides (10)
	Artifacts (7)
	Alpha and beta proteins (a/b) (2)
	Small proteins (1)

AllSelected

1 to 25 of 132 Structures

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1BI0 \| pdb_00001bi0	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.

(1998) J Biological Chem 273: 22420-22427

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)
Unique Ligands	SO4, ZN

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1BI1 \| pdb_00001bi1	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.J.

(1998) J Biological Chem 273: 22420-22427

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)

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1BI2 \| pdb_00001bi2	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.J.

(1998) J Biological Chem 273: 22420-22427

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)

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1BI3 \| pdb_00001bi3	Download File View File

STRUCTURE OF APO-AND HOLO-DIPHTHERIA TOXIN REPRESSOR

Pohl, E., Hol, W.G.J.

(1998) J Biological Chem 273: 22420-22427

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)
Unique Ligands	SO4, ZN

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1BYM \| pdb_00001bym	Download File View File

SOLUTION STRUCTURES OF THE C-TERMINAL DOMAIN OF DIPHTHERIA TOXIN REPRESSOR

Wang, G., Wylie, G.P., Twigg, P.D., Caspar, D.L.D., Murphy, J.R., Logan, T.M.

(1999) Proc Natl Acad Sci U S A 96: 6119-6124

Released	1998-10-21
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	PROTEIN (DIPHTHERIA TOXIN REPRESSOR) (protein)

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1C0W \| pdb_00001c0w	Download File View File

CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAIN

Pohl, E., Holmes, R.K., Hol, W.G.

(1999) J Mol Biology 292: 653-667

Released	2000-07-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein) DNA (5'-D(PAPTPTPAPGPGPTPTPAPGPCPCPTPAPCPCPCPTPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPTPAPGPGPTPTPAPGPGPCPTPAPCPCPCPTPAPAPT)-3') (nucleic acid)
Unique Ligands	CO

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1DDN \| pdb_00001ddn	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX

White, A., Ding, X., Vanderspek, J.C., Murphy, J.R., Ringe, D.

(1998) Nature 394: 502-506

Released	1998-10-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR (protein) 33 BASE DNA CONTAINING TOXIN OPERATOR (nucleic acid)
Unique Ligands	NI

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1DPR \| pdb_00001dpr	Download File View File

STRUCTURES OF THE APO-AND METAL ION ACTIVATED FORMS OF THE DIPHTHERIA TOX REPRESSOR FROM CORYNEBACTERIUM DIPHTHERIAE

Schiering, N., Tao, X., Murphy, J., Petsko, G.A., Ringe, D.

(1995) Proc Natl Acad Sci U S A 92: 9843-9850

Released	1995-09-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR (protein)

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1F0L \| pdb_00001f0l	Download File View File

1.55 ANGSTROM CRYSTAL STRUCTURE OF WILD TYPE DIPHTHERIA TOXIN

Steere, B., Eisenberg, D.

(2001) Thesis

Released	2000-11-16
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN (protein)
Unique Ligands	APU, CL

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1F5T \| pdb_00001f5t	Download File View File

DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE

Chen, S., White, A., Love, J., Murphy, J.R., Ringe, D.

(2000) Biochemistry 39: 10397-10407

Released	2000-09-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein) 43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE (nucleic acid)
Unique Ligands	NI

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1FWZ \| pdb_00001fwz	Download File View File

GLU20ALA DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-09-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)
Unique Ligands	SO4, ZN

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1G3S \| pdb_00001g3s	Download File View File

CYS102SER DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)

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1G3T \| pdb_00001g3t	Download File View File

CYS102SER DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)

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1G3W \| pdb_00001g3w	Download File View File

CD-CYS102SER DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)
Unique Ligands	CD, SO4

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1G3Y \| pdb_00001g3y	Download File View File

ARG80ALA DTXR

Pohl, E., Goranson-Siekierke, J., Holmes, R.K., Hol, W.G.J.

(2001) Acta Crystallogr D Biol Crystallogr 57: 619-627

Released	2001-10-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOXIN REPRESSOR (protein)
Unique Ligands	ZN

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1IW0 \| pdb_00001iw0	Download File View File

Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferric state

Hirotsu, S., Unno, M., Chu, G.C., Lee, D.S., Park, S.Y., Shiro, Y., Ikeda-Saito, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 11937-11947

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, SO4
Unique branched monosaccharides	FRU, GLC

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1IW1 \| pdb_00001iw1	Download File View File

Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferrous state

Hirotsu, S., Unno, M., Chu, G.C., Lee, D.S., Park, S.Y., Shiro, Y., Ikeda-Saito, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 11937-11947

Released	2003-04-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, SO4
Unique branched monosaccharides	FRU, GLC

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1P92 \| pdb_00001p92	Download File View File

Crystal Structure of (H79A)DtxR

D'Aquino, J.A., Ringe, D.

(2003) J Bacteriol 185: 4081-4086

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor (protein)
Unique Ligands	BME

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1QVP \| pdb_00001qvp	Download File View File

C terminal SH3-like domain from Diphtheria toxin Repressor residues 144-226.

Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Marin, V., Bhattacharya, N., Love, J.F., Murphy, J.R., Logan, T.M.

(2005) Biochemistry 44: 40-51

Released	2004-11-02
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor (protein)

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1QW1 \| pdb_00001qw1	Download File View File

Solution Structure of the C-Terminal Domain of DtxR residues 110-226

Wylie, G.P., Rangachari, V., Bienkiewicz, E.A., Love, J.F., Murphy, J.R., Logan, T.M.

(2005) Biochemistry 44: 40-51

Released	2005-03-15
Method	SOLUTION NMR
Organisms	Corynebacterium diphtheriae
Macromolecule	Diphtheria toxin repressor (protein)

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1V8X \| pdb_00001v8x	Download File View File

Crystal Structure of the Dioxygen-bound Heme Oxygenase from Corynebacterium diphtheriae

Unno, M., Matsui, T., Chu, G.C., Couture, M., Yoshida, T., Rousseau, D.L., Olson, J.S., Ikeda-Saito, M.

(2004) J Biological Chem 279: 21055-21061

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, OXY, SO4
Unique branched monosaccharides	FRU, GLC

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1WNV \| pdb_00001wnv	Download File View File

D136A mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)

Matsui, T., Unno, M., Ikeda-Saito, M.

(2005) J Biological Chem 280: 2981-2989

Released	2004-11-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, SO4

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1WNW \| pdb_00001wnw	Download File View File

D136N mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)

Unno, M., Matsui, T., Ikeda-Saito, M.

(2005) J Biological Chem 280: 2981-2989

Released	2004-11-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM, IOD, NA, SO4