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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Cupriavidus necator"

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This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Xanthobacter autotrophicus (14)
	Pseudomonas sp. YL (3)

Taxonomy

Bacteria (17)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (9)
	2.5 - 3.0 (3)

Release Date

	1990 - 1994 (9)
	1995 - 1999 (8)

Enzyme Classification Name

Hydrolases (17)

Symmetry Type

	Asymmetric (13)
	Cyclic (4)

SCOP Classification

Alpha and beta proteins (a/b) (17)

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1 to 17 of 17 Structures

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1AQ6 \| pdb_00001aq6	Download File View File

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1997) J Biological Chem 272: 33015-33022

Released	1998-01-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	L-2-HALOACID DEHALOGENASE (protein)
Unique Ligands	FMT

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1BE0 \| pdb_00001be0	Download File View File

HALOALKANE DEHALOGENASE AT PH 5.0 CONTAINING ACETIC ACID

Ridder, I.S., Vos, G.J., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1998) Biochemistry 37: 15013-15023

Released	1998-11-11
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	ACT, ACY

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1BEE \| pdb_00001bee	Download File View File

HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR

Ridder, I.S., Vos, G.J., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1998) Biochemistry 37: 15013-15023

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1BEZ \| pdb_00001bez	Download File View File

HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR AT PH 5

Ridder, I.S., Vos, G.J., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1998) Biochemistry 37: 15013-15023

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	ACY

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1EDB \| pdb_00001edb	Download File View File

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Biochemistry 32: 9031-9037

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL

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1EDD \| pdb_00001edd	Download File View File

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Biochemistry 32: 9031-9037

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL

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1EDE \| pdb_00001ede	Download File View File

REFINED X-RAY STRUCTURES OF HALOALKANE DEHALOGENASE AT PH 6.2 AND PH 8.2 AND IMPLICATIONS FOR THE REACTION MECHANISM

Verschueren, K.H.G., Dijkstra, B.W.

(1993) J Mol Biology 232: 856-872

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1HDE \| pdb_00001hde	Download File View File

HALOALKANE DEHALOGENASE MUTANT WITH PHE 172 REPLACED WITH TRP

Ridder, I.S., Kalk, K.H., Dijkstra, B.W.

(1996) Biochemistry 35: 13186-13195

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1JUD \| pdb_00001jud	Download File View File

L-2-HALOACID DEHALOGENASE

Hisano, T., Hata, Y., Fujii, T., Liu, J.-Q., Kurihara, T., Esaki, N., Soda, K.

(1996) J Biological Chem 271: 20322-20330

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas sp. YL
Macromolecule	L-2-HALOACID DEHALOGENASE (protein)

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1ZRM \| pdb_00001zrm	Download File View File

CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE

Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.

(1998) J Biological Chem 273: 15035-15044

Released	1999-03-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas sp. YL
Macromolecule	L-2-HALOACID DEHALOGENASE (protein)
Unique Ligands	BUA

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1ZRN \| pdb_00001zrn	Download File View File

INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE

Li, Y.-F., Hata, Y., Fujii, T., Hisano, T., Nishihara, M., Kurihara, T., Esaki, N.

(1998) J Biological Chem 273: 15035-15044

Released	1999-03-23
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Pseudomonas sp. YL
Macromolecule	L-2-HALOACID DEHALOGENASE (protein)
Unique Ligands	ACY

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2DHC \| pdb_00002dhc	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF HALOALKANE DEHALOGENASE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Nature 363: 693-698

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	DCE

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2DHD \| pdb_00002dhd	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF HALOALKANE DEHALOGENASE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Nature 363: 693-698

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL

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2DHE \| pdb_00002dhe	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF HALOALKANE DEHALOGENASE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Nature 363: 693-698

Released	1994-08-31
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL

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2EDA \| pdb_00002eda	Download File View File

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Biochemistry 32: 9031-9037

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	IOD

Explore in 3D

2EDC \| pdb_00002edc	Download File View File

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Biochemistry 32: 9031-9037

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	IOD

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2HAD \| pdb_00002had	Download File View File

CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE: AN ENZYME TO DETOXIFY HALOGENATED ALKANES

Verschueren, K.H.G., Franken, S.M., Dijkstra, B.W.

(1991) EMBO J 10: 1297-1302

Released	1993-01-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

1 to 17 of 17 Structures

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1AQ6 | pdb_00001aq6

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS

1BE0 | pdb_00001be0

HALOALKANE DEHALOGENASE AT PH 5.0 CONTAINING ACETIC ACID

1BEE | pdb_00001bee

HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR

1BEZ | pdb_00001bez

HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR AT PH 5

1EDB | pdb_00001edb

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

1EDD | pdb_00001edd

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

1EDE | pdb_00001ede

REFINED X-RAY STRUCTURES OF HALOALKANE DEHALOGENASE AT PH 6.2 AND PH 8.2 AND IMPLICATIONS FOR THE REACTION MECHANISM

1HDE | pdb_00001hde

HALOALKANE DEHALOGENASE MUTANT WITH PHE 172 REPLACED WITH TRP

1JUD | pdb_00001jud

L-2-HALOACID DEHALOGENASE

1ZRM | pdb_00001zrm

CRYSTAL STRUCTURE OF THE REACTION INTERMEDIATE OF L-2-HALOACID DEHALOGENASE WITH 2-CHLORO-N-BUTYRATE

1ZRN | pdb_00001zrn

INTERMEDIATE STRUCTURE OF L-2-HALOACID DEHALOGENASE WITH MONOCHLOROACETATE

2DHC | pdb_00002dhc

CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF HALOALKANE DEHALOGENASE

2DHD | pdb_00002dhd

CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF HALOALKANE DEHALOGENASE

2DHE | pdb_00002dhe

CRYSTALLOGRAPHIC ANALYSIS OF THE CATALYTIC MECHANISM OF HALOALKANE DEHALOGENASE

2EDA | pdb_00002eda

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

2EDC | pdb_00002edc

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

2HAD | pdb_00002had

CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE: AN ENZYME TO DETOXIFY HALOGENATED ALKANES

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AQ6 | pdb_00001aq6

1BE0 | pdb_00001be0

1BEE | pdb_00001bee

1BEZ | pdb_00001bez

1EDB | pdb_00001edb

1EDD | pdb_00001edd

1EDE | pdb_00001ede

1HDE | pdb_00001hde

1JUD | pdb_00001jud

1ZRM | pdb_00001zrm

1ZRN | pdb_00001zrn

2DHC | pdb_00002dhc

2DHD | pdb_00002dhd

2DHE | pdb_00002dhe

2EDA | pdb_00002eda

2EDC | pdb_00002edc

2HAD | pdb_00002had