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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Mycoplasma capricolum"

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This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Mycoplasma capricolum subsp. capricolum (6)
	Mycoplasma capricolum (2)

Taxonomy

Bacteria (8)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (2)
	2015 - 2019 (1)
	2020 - 2024 (5)

Enzyme Classification Name

Transferases (3)

Symmetry Type

	Cyclic (5)
	Asymmetric (3)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

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1 to 8 of 8 Structures

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1PCH \| pdb_00001pch	Download File View File

STRUCTURAL EVIDENCE FOR THE EVOLUTIONARY DIVERGENCE OF MYCOPLASMA FROM GRAM-POSITIVE BACTERIA: THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN

Pieper, U., Herzberg, O.

(1995) Structure 3: 781-790

Released	1995-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycoplasma capricolum
Macromolecule	PHOSPHOCARRIER PROTEIN (protein)
Unique Ligands	SO4

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2GPR \| pdb_00002gpr	Download File View File

GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM

Huang, K., Herzberg, O.

(1998) Structure 6: 697-710

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycoplasma capricolum
Macromolecule	GLUCOSE-PERMEASE IIA COMPONENT (protein)

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6L2L \| pdb_00006l2l	Download File View File

The structure of the tRNA-specific deaminase from M. capricolum

Xie, W., Liu, H., Wu, S.

(2020) Biochem J 477: 1483-1497

Released	2020-08-12
Method	X-RAY DIFFRACTION 2.40045827641 Å
Organisms	Mycoplasma capricolum subsp. capricolum
Macromolecule	Nucleoside deaminase family protein (protein)
Unique Ligands	ZN

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6L2M \| pdb_00006l2m	Download File View File

The structure of the tRNA-specific deaminase mutant from M. capricolum

Xie, W., Liu, H., Wu, S.

(2020) Biochem J 477: 1483-1497

Released	2020-08-12
Method	X-RAY DIFFRACTION 2.30254929158 Å
Organisms	Mycoplasma capricolum subsp. capricolum
Macromolecule	Nucleoside deaminase family protein (protein)
Unique Ligands	CL, ZN

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6QE6 \| pdb_00006qe6	Download File View File

Structure of M. capricolum TrmK in complex with the natural cofactor product S-adenosyl-homocysteine (SAH)

Oerum, S., Catala, M., Atdjian, C., Brachet, F., Ponchon, L., Barraud, P., Iannazzo, L., Droogmans, L., Braud, E., Etheve-Quelquejeu, M., Tisne, C.

(2019) RNA Biol 16: 798-808

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Mycoplasma capricolum subsp. capricolum
Macromolecule	tRNA (Adenine(22)-N(1))-methyltransferase (protein)
Unique Ligands	SAH

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7E3T \| pdb_00007e3t	Download File View File

Crystal structure of TrmL from Mycoplasma capricolum

Kim, J., Son, J.

To be published

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycoplasma capricolum subsp. capricolum
Macromolecule	Putative tRNA (cytidine(34)-2'-O)-methyltransferase (protein)

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7WM5 \| pdb_00007wm5	Download File View File

Crystal structure of apo TrmM from Mycoplasma capricolum

Jeong, H., Kim, J.

(2022) Protein Sci 31: e4319-e4319

Released	2022-06-29
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycoplasma capricolum subsp. capricolum
Macromolecule	Methyltransferase (protein)

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7WM6 \| pdb_00007wm6	Download File View File

Crystal structure of SAH-bound TrmM from Mycoplasma capricolum

Jeong, H., Kim, J.

(2022) Protein Sci 31: e4319-e4319

Released	2022-06-29
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Mycoplasma capricolum subsp. capricolum
Macromolecule	Methyltransferase (protein)
Unique Ligands	SAH, SO4

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1PCH | pdb_00001pch

STRUCTURAL EVIDENCE FOR THE EVOLUTIONARY DIVERGENCE OF MYCOPLASMA FROM GRAM-POSITIVE BACTERIA: THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN

2GPR | pdb_00002gpr

GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM

6L2L | pdb_00006l2l

The structure of the tRNA-specific deaminase from M. capricolum

6L2M | pdb_00006l2m

The structure of the tRNA-specific deaminase mutant from M. capricolum

6QE6 | pdb_00006qe6

Structure of M. capricolum TrmK in complex with the natural cofactor product S-adenosyl-homocysteine (SAH)

7E3T | pdb_00007e3t

Crystal structure of TrmL from Mycoplasma capricolum

7WM5 | pdb_00007wm5

Crystal structure of apo TrmM from Mycoplasma capricolum

7WM6 | pdb_00007wm6

Crystal structure of SAH-bound TrmM from Mycoplasma capricolum

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1PCH | pdb_00001pch

2GPR | pdb_00002gpr

6L2L | pdb_00006l2l

6L2M | pdb_00006l2m

6QE6 | pdb_00006qe6

7E3T | pdb_00007e3t

7WM5 | pdb_00007wm5

7WM6 | pdb_00007wm6