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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Sphingobacterium multivorum"

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This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

Sphingobacterium multivorum (10)

Taxonomy

Bacteria (10)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (6)
	2.0 - 2.5 (1)

Release Date

	2005 - 2009 (1)
	2020 - 2024 (9)

Enzyme Classification Name

Transferases (10)

Symmetry Type

Cyclic (10)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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1 to 10 of 10 Structures

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3A2B \| pdb_00003a2b	Download File View File

Crystal Structure of Serine Palmitoyltransferase from Sphingobacterium multivorum with substrate L-serine

Okamoto, A., Hoseki, J.

(2009) J Biochem 146: 549-562

Released	2009-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	PLP, SER

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8GUH \| pdb_00008guh	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Tris

Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2022) Acta Crystallogr F Struct Biol Commun 78: 408-415

Released	2023-07-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, K9E

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8H1Q \| pdb_00008h1q	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-serine

Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2023) J Biological Chem 299: 104684-104684

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, PLS

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8H1W \| pdb_00008h1w	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum

Takahashi, A., Murakami, T., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2023) J Biological Chem 299: 104684-104684

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO

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8H1Y \| pdb_00008h1y	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-homoserine

Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2023) J Biological Chem 299: 104684-104684

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, KPU

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8H20 \| pdb_00008h20	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Glycine

Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2023) J Biological Chem 299: 104684-104684

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, PLG

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8H21 \| pdb_00008h21	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-alanine

Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2023) J Biological Chem 299: 104684-104684

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, PDA

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8H29 \| pdb_00008h29	Download File View File

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-threonine

Murakami, T., Takahashi, A., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2023) J Biological Chem 299: 104684-104684

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	2BO, EDO

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8IYP \| pdb_00008iyp	Download File View File

Crystal structure of serine palmitoyltransferase soaked in 190 mM D-serine solution

Takahashi, A., Murakami, T., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2024) J Biological Chem 300: 105728-105728

Released	2024-04-10
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, PLS

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8IYT \| pdb_00008iyt	Download File View File

Crystal Structure of Serine Palmitoyltransferase complexed with D-methylserine

Takahashi, A., Murakami, T., Katayama, A., Miyahara, I., Kamiya, N., Ikushiro, H., Yano, T.

(2024) J Biological Chem 300: 105728-105728

Released	2024-04-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sphingobacterium multivorum
Macromolecule	Serine palmitoyltransferase (protein)
Unique Ligands	EDO, S5R

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3A2B | pdb_00003a2b

Crystal Structure of Serine Palmitoyltransferase from Sphingobacterium multivorum with substrate L-serine

8GUH | pdb_00008guh

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Tris

8H1Q | pdb_00008h1q

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-serine

8H1W | pdb_00008h1w

Serine Palmitoyltransferase from Sphingobacterium multivorum

8H1Y | pdb_00008h1y

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-homoserine

8H20 | pdb_00008h20

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with Glycine

8H21 | pdb_00008h21

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-alanine

8H29 | pdb_00008h29

Serine Palmitoyltransferase from Sphingobacterium multivorum complexed with L-threonine

8IYP | pdb_00008iyp

Crystal structure of serine palmitoyltransferase soaked in 190 mM D-serine solution

8IYT | pdb_00008iyt

Crystal Structure of Serine Palmitoyltransferase complexed with D-methylserine

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3A2B | pdb_00003a2b

8GUH | pdb_00008guh

8H1Q | pdb_00008h1q

8H1W | pdb_00008h1w

8H1Y | pdb_00008h1y

8H20 | pdb_00008h20

8H21 | pdb_00008h21

8H29 | pdb_00008h29

8IYP | pdb_00008iyp

8IYT | pdb_00008iyt