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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Streptomyces avidinii"

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Search Summary

This query matches 300 Structures.

Refinements

Structure Determination Methodology

experimental (300)

Scientific Name of Source Organism

	Streptomyces avidinii (300)
	synthetic construct (12)
	Bothrops insularis (5)
	Escherichia coli (2)
	Mycobacterium tuberculosis variant bovis AF2122/97 (2)
	Homo sapiens (1)

Taxonomy

	Bacteria (300)
	other sequences (12)
	Eukaryota (6)

Experimental Method

	X-RAY DIFFRACTION (294)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (300)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (96)
	1.5 - 2.0 (163)
	2.0 - 2.5 (31)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)

Release Date

	1990 - 1994 (8)
	1995 - 1999 (75)
	2000 - 2004 (30)
	2005 - 2009 (5)
	2010 - 2014 (36)
	2015 - 2019 (52)
	2020 - 2024 (82)
	2025 - 2029 (12)

Enzyme Classification Name

Oxidoreductases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Dihedral (282)
	Cyclic (19)
	Asymmetric (13)

SCOP Classification

	All beta proteins (225)
	Artifacts (61)

AllSelected

1 to 25 of 300 Structures

Page 1 of 12

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1DF8 \| pdb_00001df8	Download File View File

S45A MUTANT OF STREPTAVIDIN IN COMPLEX WITH BIOTIN

Hyre, D.E., Le Trong, I., Freitag, S., Stenkamp, R.E., Stayton, P.S.

(2000) Protein Sci 9: 878-885

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Streptomyces avidinii
Macromolecule	PROTEIN (STREPTAVIDIN) (protein)
Unique Ligands	BTN

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1HQQ \| pdb_00001hqq	Download File View File

MINIPROTEIN MP-2 (M9A) COMPLEX WITH STREPTAVIDIN

Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

To be published

Released	2003-09-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	MP-2 (protein) STREPTAVIDIN (protein)

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1HXL \| pdb_00001hxl	Download File View File

MINIPROTEIN MP-2 (V10A) COMPLEX WITH STREPTAVIDIN

Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avidinii
Macromolecule	MP-2 (protein) STREPTAVIDIN (protein)

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1HXZ \| pdb_00001hxz	Download File View File

MINIPROTEIN MP-2 COMPLEX WITH STREPTAVIDIN

Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avidinii
Macromolecule	MP-2 (protein) STREPTAVIDIN (protein)

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1HY2 \| pdb_00001hy2	Download File View File

MINIPROTEIN MP-1 COMPLEX WITH STREPTAVIDIN

Yang, H.W., Liu, D.Q., Fan, X., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces avidinii
Macromolecule	MP-1 (protein) STREPTAVIDIN (protein)

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1I9H \| pdb_00001i9h	Download File View File

CORE STREPTAVIDIN-BNA COMPLEX

Livnah, O., Huberman, T., Wilchek, M., Bayer, E.A., Eisenberg-Domovich, Y.

(2001) J Biological Chem 276: 32031-32039

Released	2001-09-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces avidinii
Macromolecule	STREPTAVIDIN (protein)
Unique Ligands	BNI

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1KFF \| pdb_00001kff	Download File View File

An engineered streptavidin with improved affinity for the strep-tag II peptide: apo-SAM1

Korndoerfer, I.P., Skerra, A.

(2002) Protein Sci 11: 883-893

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces avidinii
Macromolecule	streptavidin (protein)

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1KL3 \| pdb_00001kl3	Download File View File

an engineered streptavidin with improved affinity for the strep-tag II peptide : SAm1-StrepII

Korndoerfer, I.P., Skerra, A.

(2002) Protein Sci 11: 883-893

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	strep-tag II peptide (protein) streptavidin (protein)

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1KL4 \| pdb_00001kl4	Download File View File

AN ENGINEERED STREPTAVIDIN WITH IMPROVED AFFINITY FOR THE STREP-TAG II PEPTIDE : apo-SAM2

Korndoerfer, I.P., Skerra, A.

(2002) Protein Sci 11: 883-893

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	streptavidin (protein)

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1KL5 \| pdb_00001kl5	Download File View File

an engineered streptavidin with improved affinity for the strep-tag II peptide : SAm2-StrepII

Korndoerfer, I.P., Skerra, A.

(2002) Protein Sci 11: 883-893

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avidinii
Macromolecule	strep-tag II (protein) streptavidin (protein)

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1LCV \| pdb_00001lcv	Download File View File

streptavidin-norbiotin complex

Livnah, O., Pazy, Y.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces avidinii
Macromolecule	streptavidin (protein)
Unique Ligands	SNR

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1LCW \| pdb_00001lcw	Download File View File

streptavidin-homobiotin complex

Livnah, O., Pazy, Y., Bayer, E.A., Wilchek, M.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	SHM

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1LCZ \| pdb_00001lcz	Download File View File

streptavidin-BCAP complex

Livnah, O., Pazy, Y., Bayer, E.A., Wilchek, M.

(2002) J Biological Chem 277: 30892-30900

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BH7

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1LUQ \| pdb_00001luq	Download File View File

Full Matrix Error Analysis of Streptavidin

Merritt, E.A., Le Trong, I.

To be published

Released	2003-09-09
Method	X-RAY DIFFRACTION 0.96 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN, GOL, MPD

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1MEP \| pdb_00001mep	Download File View File

Crystal Structure of Streptavidin Double Mutant S45A/D128A with Biotin: Cooperative Hydrogen-Bond Interactions in the Streptavidin-Biotin System.

Hyre, D.E., Le Trong, I., Merritt, E.A., Stenkamp, R.E., Green, N.M., Stayton, P.S.

(2006) Protein Sci 15: 459-467

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN

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1MK5 \| pdb_00001mk5	Download File View File

Wildtype Core-Streptavidin with Biotin at 1.4A.

Hyre, D.E., Le Trong, I., Merritt, E.A., Green, N.M., Stenkamp, R.E., Stayton, P.S.

(2006) Protein Sci 15: 459-467

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN

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1MM9 \| pdb_00001mm9	Download File View File

Streptavidin Mutant with Insertion of Fibronectin Hexapeptide, including RGD

Le Trong, I., McDevitt, T.C., Nelson, K.E., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 828-834

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	MRD

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1MOY \| pdb_00001moy	Download File View File

Streptavidin Mutant with Osteopontin Hexapeptide Insertion Including RGD

Le Trong, I., McDevitt, T.C., Nelson, K.E., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 828-834

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	MRD

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1N43 \| pdb_00001n43	Download File View File

Streptavidin Mutant N23A with biotin at 1.89A

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN

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1N4J \| pdb_00001n4j	Download File View File

STREPTAVIDIN MUTANT N23A AT 2.18A

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)

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1N7Y \| pdb_00001n7y	Download File View File

STREPTAVIDIN MUTANT N23E AT 1.96A

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)

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1N9M \| pdb_00001n9m	Download File View File

Streptavidin Mutant S27A with Biotin at 1.6A Resolution

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	BTN

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1N9Y \| pdb_00001n9y	Download File View File

Streptavidin Mutant S27A at 1.5A Resolution

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	MPD, MRD

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1NBX \| pdb_00001nbx	Download File View File

Streptavidin Mutant Y43A at 1.70A Resolution

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	MRD

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1NC9 \| pdb_00001nc9	Download File View File

STREPTAVIDIN MUTANT Y43A WITH IMINOBIOTIN AT 1.8A RESOLUTION

Le Trong, I., Freitag, S., Klumb, L.A., Chu, V., Stayton, P.S., Stenkamp, R.E.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1567-1573

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avidinii
Macromolecule	Streptavidin (protein)
Unique Ligands	IMI

1 to 25 of 300 Structures

Page 1 of 12

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DF8 | pdb_00001df8

1HQQ | pdb_00001hqq

1HXL | pdb_00001hxl

1HXZ | pdb_00001hxz

1HY2 | pdb_00001hy2

1I9H | pdb_00001i9h

1KFF | pdb_00001kff

1KL3 | pdb_00001kl3

1KL4 | pdb_00001kl4

1KL5 | pdb_00001kl5

1LCV | pdb_00001lcv

1LCW | pdb_00001lcw

1LCZ | pdb_00001lcz

1LUQ | pdb_00001luq

1MEP | pdb_00001mep

1MK5 | pdb_00001mk5

1MM9 | pdb_00001mm9

1MOY | pdb_00001moy

1N43 | pdb_00001n43

1N4J | pdb_00001n4j

1N7Y | pdb_00001n7y

1N9M | pdb_00001n9m

1N9Y | pdb_00001n9y

1NBX | pdb_00001nbx

1NC9 | pdb_00001nc9