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235,458 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Sulfolobus acidocaldarius DSM 639"

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Search Summary

This query matches 67 Structures.

Refinements

Structure Determination Methodology

experimental (67)

Scientific Name of Source Organism

	Sulfolobus acidocaldarius DSM 639 (67)
	Saccharolobus solfataricus P2 (7)
	synthetic construct (5)
	Haloferax volcanii (2)
	Bicaudavirus pozzuoliense (1)

Taxonomy

	Archaea (67)
	other sequences (5)
	Viruses incertae sedis (1)

Experimental Method

	X-RAY DIFFRACTION (46)
	ELECTRON MICROSCOPY (20)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (67)
	RNA (13)
	DNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (12)
	2.0 - 2.5 (17)
	2.5 - 3.0 (15)
	3.0 - 3.5 (6)
	3.5 - 4.0 (3)
	4.0 - 4.5 (3)
	> 4.5 (9)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (3)
	2010 - 2014 (17)
	2015 - 2019 (13)
	2020 - 2024 (33)

Enzyme Classification Name

	Transferases (10)
	Oxidoreductases (15)
	Hydrolases (5)
	Lyases (3)

Symmetry Type

	Asymmetric (40)
	Cyclic (22)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (7)
	Artifacts (1)

AllSelected

1 to 25 of 67 Structures

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1B06 \| pdb_00001b06	Download File View File

SUPEROXIDE DISMUTASE FROM SULFOLOBUS ACIDOCALDARIUS

Knapp, S., Kardinahl, S., Niklas, H., Tibbelin, G., Schafer, G., Ladenstein, R.

(1999) J Mol Biology 285: 689-702

Released	1999-11-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	FE

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2NUW \| pdb_00002nuw	Download File View File

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure at 1.8 A resolution

van Eerde, A., Dijkstra, B.W.

(2007) Biochem J 403: 421-430

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase (protein)
Unique Ligands	MG

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2NUX \| pdb_00002nux	Download File View File

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure in p6522 at 2.5 A resolution

van Eerde, A., Dijkstra, B.W.

(2007) Biochem J 403: 421-430

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase (protein)
Unique Ligands	MG

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2NUY \| pdb_00002nuy	Download File View File

2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius in complex with pyruvate

van Eerde, A., Dijkstra, B.W.

(2007) Biochem J 403: 421-430

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase (protein)
Unique Ligands	MG, PYR

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3TC3 \| pdb_00003tc3	Download File View File

Crystal Structure of SacUVDE

Meulenbroek, E.M., Jala, I., Moolenaar, G.F., Goosen, N., Pannu, N.S.

(2013) Nucleic Acids Res 41: 1363-1371

Released	2012-11-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	UV damage endonuclease (protein)
Unique Ligands	MN

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4F4W \| pdb_00004f4w	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #1

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.898 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPCPAPCPTPGPAPTPCPGPGPC)-3') (nucleic acid) DNA (5'-D(TPTPAPCPGPGPCPCPGPAPTPCPAPGPTPGPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP

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4F4X \| pdb_00004f4x	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.049 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPCPAPCPTPGPAPTPCPGPGPGPC)-3') (nucleic acid) DNA (5'-D(TPTPAPCPGPCPCPCPTPGPAPTPCPAPGPTPGPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP

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4F4Y \| pdb_00004f4y	Download File View File

Y-family DNA polymerase chimera Dbh-Dpo4-Dbh

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.338 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPCPAPCPTPGPAPTPCPGPGPGPCPCPC)-3') (nucleic acid) DNA (5'-D(TPTPAPCPGPCPCPCPTPGPAPTPCPAPGPTPGPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP

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4F4Z \| pdb_00004f4z	Download File View File

Y-family DNA polymerase chimera Dpo4-Dpo4-Dbh

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.305 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(APGPGPGPGPGPAPAPGPCPCPG)-3') (nucleic acid) DNA (5'-D(TPTPCPCPGPCPCPCPGPGPCPTPTPCPCPCPCPCP*T)-3') (nucleic acid)
Unique Ligands	CA

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4F50 \| pdb_00004f50	Download File View File

Y-family DNA polymerase chimera Dbh-Dbh-Dpo4

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.215 Å
Organisms	Saccharolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPCPGPCPCPTGPGPCPTPTPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPAPAPGPCPCPGPGP*C)-3') (nucleic acid)
Unique Ligands	CA

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4FN4 \| pdb_00004fn4	Download File View File

short-chain NAD(H)-dependent dehydrogenase/reductase from Sulfolobus acidocaldarius

Pennacchio, A., Sannino, V., Sorrentino, G., Rossi, M., Raia, C.A., Esposito, L.

(2013) Appl Microbiol Biotechnol 97: 3949-3964

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Short chain dehydrogenase (protein)
Unique Ligands	GOL, NAD, SO4

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4HYK \| pdb_00004hyk	Download File View File

Dbh Ternary Complex (substrates partially disordered)

Pata, J.D., Wilson, R.C.

(2013) Structure 21: 20-31

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.802 Å
Organisms	Sulfolobus acidocaldarius DSM 639 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPAPAPGPCPCPGPG)-3') (nucleic acid) DNA (5'-D(TPTPCPCPGPCPCPCPCPGPGPCPTPTPCPCP*C)-3') (nucleic acid)

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4IHQ \| pdb_00004ihq	Download File View File

Archaellum Assembly ATPase FlaI bound to ADP

Reindl, S., Williams, G.J., Tainer, J.A.

(2013) Mol Cell 49: 1069-1082

Released	2013-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	FlaI ATPase (protein)
Unique Ligands	ADP, EDO, MG, PO4

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4II7 \| pdb_00004ii7	Download File View File

Archaellum Assembly ATPase FlaI

Reindl, S., Williams, G.J., Tainer, J.A.

(2013) Mol Cell 49: 1069-1082

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.59 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	FlaI ATPase (protein)

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4OPC \| pdb_00004opc	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, PGT

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4OPD \| pdb_00004opd	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG

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4OPG \| pdb_00004opg	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG, SO4

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4OPI \| pdb_00004opi	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG

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4OPL \| pdb_00004opl	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA

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4OPT \| pdb_00004opt	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG, SO4

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4OPU \| pdb_00004opu	Download File View File

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase

McAndrew, R.P., Kung, Y., Xie, X., Liu, C., Pereira, J.H., Keasling, J.D., Adams, P.D.

(2014) Structure 22: 1028-1036

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved Archaeal protein (protein)
Unique Ligands	FDA, GRG

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4P94 \| pdb_00004p94	Download File View File

The crystal structure of the soluble domain of Sulfolobus acidocaldarius FlaF (residues 35-164)

Tsai, C.-L., Arvai, A.S., Ishida, J.P., Tainer, J.A.

(2015) Structure 23: 863-872

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.651 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Conserved flagellar protein F (protein)
Unique Ligands	NA

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4TT5 \| pdb_00004tt5	Download File View File

Crystal Structure of CYP119 from Sulfolobus acidocaldarius, complexed with 4-(4-bromophenyl)-1H imidazole

Madrona, Y.

To be published

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Cytochrome P450 119 (protein)
Unique Ligands	36Y, GOL, HEM

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4TUV \| pdb_00004tuv	Download File View File

X-ray crystal structure of CYP119 from Sulfolobus acidocaldarius, complexed with 4-(4-chlorophenyl)imidazole

Madrona, Y.

To be published

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Cytochrome P450 119 (protein)
Unique Ligands	CPZ, HEM

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4WPD \| pdb_00004wpd	Download File View File

X-ray Crystal Structure of CYP119 complexed with 4-(4-flourophenyl)-1H-imidazole

Madrona, Y.

To be published

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Cytochrome P450 119 (protein)
Unique Ligands	3SQ, HEM

1 to 25 of 67 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1B06 | pdb_00001b06

2NUW | pdb_00002nuw

2NUX | pdb_00002nux

2NUY | pdb_00002nuy

3TC3 | pdb_00003tc3

4F4W | pdb_00004f4w

4F4X | pdb_00004f4x

4F4Y | pdb_00004f4y

4F4Z | pdb_00004f4z

4F50 | pdb_00004f50

4FN4 | pdb_00004fn4

4HYK | pdb_00004hyk

4IHQ | pdb_00004ihq

4II7 | pdb_00004ii7

4OPC | pdb_00004opc

4OPD | pdb_00004opd

4OPG | pdb_00004opg

4OPI | pdb_00004opi

4OPL | pdb_00004opl

4OPT | pdb_00004opt

4OPU | pdb_00004opu

4P94 | pdb_00004p94

4TT5 | pdb_00004tt5

4TUV | pdb_00004tuv

4WPD | pdb_00004wpd