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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Xanthobacter autotrophicus"

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Xanthobacter autotrophicus (21)
	Xanthobacter autotrophicus Py2 (19)

Taxonomy

Bacteria (40)

Experimental Method

X-RAY DIFFRACTION (40)

Polymer Entity Type

Protein (40)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (21)
	2.0 - 2.5 (13)
	2.5 - 3.0 (5)

Release Date

	1990 - 1994 (9)
	1995 - 1999 (10)
	2000 - 2004 (2)
	2005 - 2009 (5)
	2010 - 2014 (7)
	2015 - 2019 (5)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (21)
	Oxidoreductases (10)
	Ligases (3)

Symmetry Type

	Cyclic (19)
	Asymmetric (18)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (32)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 40 Structures

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1AQ6 \| pdb_00001aq6	Download File View File

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1997) J Biological Chem 272: 33015-33022

Released	1998-01-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	L-2-HALOACID DEHALOGENASE (protein)
Unique Ligands	FMT

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1B6G \| pdb_00001b6g	Download File View File

HALOALKANE DEHALOGENASE AT PH 5.0 CONTAINING CHLORIDE

Ridder, I.S., Rozeboom, H.J., Dijkstra, B.W.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1273-1290

Released	1999-07-13
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL, GOL, SO4

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1BE0 \| pdb_00001be0	Download File View File

HALOALKANE DEHALOGENASE AT PH 5.0 CONTAINING ACETIC ACID

Ridder, I.S., Vos, G.J., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1998) Biochemistry 37: 15013-15023

Released	1998-11-11
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	ACT, ACY

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1BEE \| pdb_00001bee	Download File View File

HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR

Ridder, I.S., Vos, G.J., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1998) Biochemistry 37: 15013-15023

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1BEZ \| pdb_00001bez	Download File View File

HALOALKANE DEHALOGENASE MUTANT WITH TRP 175 REPLACED BY TYR AT PH 5

Ridder, I.S., Vos, G.J., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1998) Biochemistry 37: 15013-15023

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	ACY

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1CIJ \| pdb_00001cij	Download File View File

HALOALKANE DEHALOGENASE SOAKED WITH HIGH CONCENTRATION OF BROMIDE

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1999) Biochemistry 38: 12052-12061

Released	1999-09-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	PROTEIN (HALOALKANE DEHALOGENASE) (protein)
Unique Ligands	BR

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1EDB \| pdb_00001edb	Download File View File

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Biochemistry 32: 9031-9037

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL

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1EDD \| pdb_00001edd	Download File View File

CRYSTALLOGRAPHIC AND FLUORESCENCE STUDIES OF THE INTERACTION OF HALOALKANE DEHALOGENASE WITH HALIDE IONS: STUDIES WITH HALIDE COMPOUNDS REVEAL A HALIDE BINDING SITE IN THE ACTIVE SITE

Verschueren, K.H.G., Dijkstra, B.W.

(1993) Biochemistry 32: 9031-9037

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)
Unique Ligands	CL

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1EDE \| pdb_00001ede	Download File View File

REFINED X-RAY STRUCTURES OF HALOALKANE DEHALOGENASE AT PH 6.2 AND PH 8.2 AND IMPLICATIONS FOR THE REACTION MECHANISM

Verschueren, K.H.G., Dijkstra, B.W.

(1993) J Mol Biology 232: 856-872

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1HDE \| pdb_00001hde	Download File View File

HALOALKANE DEHALOGENASE MUTANT WITH PHE 172 REPLACED WITH TRP

Ridder, I.S., Kalk, K.H., Dijkstra, B.W.

(1996) Biochemistry 35: 13186-13195

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	HALOALKANE DEHALOGENASE (protein)

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1MO9 \| pdb_00001mo9	Download File View File

NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE COMPLEXED WITH 2-KETOPROPYL COENZYME M

Nocek, B., Jang, S.B., Jeong, M.S., Clark, D.D., Ensign, S.A., Peters, J.W.

(2002) Biochemistry 41: 12907-12913

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	orf3 (protein)
Unique Ligands	FAD, KPC

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1MOK \| pdb_00001mok	Download File View File

NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE

Nocek, B., Jang, S.B., Jeong, M.S., Clark, D.D., Ensign, S.A., Peters, J.W.

(2002) Biochemistry 41: 12907-12913

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	orf3 (protein)
Unique Ligands	FAD

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1QQ5 \| pdb_00001qq5	Download File View File

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1999) J Biological Chem 274: 30672-30678

Released	1999-10-25
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	PROTEIN (L-2-HALOACID DEHALOGENASE) (protein)
Unique Ligands	FMT

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1QQ6 \| pdb_00001qq6	Download File View File

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS WITH CHLOROACETIC ACID COVALENTLY BOUND

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1999) J Biological Chem 274: 30672-30678

Released	1999-10-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	PROTEIN (L-2-HALOACID DEHALOGENASE) (protein)
Unique Ligands	CL

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1QQ7 \| pdb_00001qq7	Download File View File

STRUCTURE OF L-2-HALOACID DEHALOGENASE FROM XANTHOBACTER AUTOTROPHICUS WITH CHLOROPROPIONIC ACID COVALENTLY BOUND

Ridder, I.S., Rozeboom, H.J., Kalk, K.H., Dijkstra, B.W.

(1999) J Biological Chem 274: 30672-30678

Released	1999-10-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xanthobacter autotrophicus
Macromolecule	PROTEIN (L-2-HALOACID DEHALOGENASE) (protein)
Unique Ligands	CL

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2C3C \| pdb_00002c3c	Download File View File

2.01 Angstrom X-ray crystal structure of a mixed disulfide between coenzyme M and NADPH-dependent oxidoreductase 2-ketopropyl coenzyme M carboxylase

Pandey, A.S., Nocek, B., Clark, D.D., Ensign, S.A., Peters, J.W.

(2006) Biochemistry 45: 113

Released	2005-12-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-OXOPROPYL-COM REDUCTASE (protein)
Unique Ligands	ACN, COM, FAD, NAP

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2C3D \| pdb_00002c3d	Download File View File

2.15 Angstrom crystal structure of 2-ketopropyl coenzyme M oxidoreductase carboxylase with a coenzyme M disulfide bound at the active site

Pandey, A.S., Nocek, B., Clark, D.D., Ensign, S.A., Peters, J.W.

(2006) Biochemistry 45: 113

Released	2005-11-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-OXOPROPYL-COM REDUCTASE (protein)
Unique Ligands	COM, FAD

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2CFC \| pdb_00002cfc	Download File View File

structural basis for stereo selectivity in the (R)- and (S)- hydroxypropylethane thiosulfonate dehydrogenases

Krishnakumar, A.M., Nocek, B.P., Clark, D.D., Ensign, S.A., Peters, J.W.

(2006) Biochemistry 45: 8831

Released	2006-07-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-(R)-HYDROXYPROPYL-COM DEHYDROGENASE (protein)
Unique Ligands	KPC, NAD