RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 2.6.1.30

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (11)
	Mus musculus (2)
	Aquifex aeolicus (1)
	Escherichia coli (1)
	Schizosaccharomyces pombe (1)
	Scytonema varium (1)

Taxonomy

	Eukaryota (14)
	Bacteria (3)

Experimental Method

	SOLUTION NMR (15)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

	Protein (17)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (5)
	2005 - 2009 (3)
	2010 - 2014 (5)

Enzyme Classification Name

	Transferases (11)
	Ligases (6)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Small proteins (4)
	Artifacts (4)
	All beta proteins (3)
	All alpha proteins (2)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

Sort by

Explore in 3D

1DXA \| pdb_00001dxa	Download File View File

BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA

Yeh, H.J.C., Sayer, J.M., Liu, X., Altieri, A.S., Byrd, R.A., Lakshman, M.K., Yagi, H., Schurter, E.J., Gorenstein, D.G., Jerina, D.M.

(1995) Biochemistry 34: 13570-13581

Released	1995-12-07
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPTPCPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPCPAPCPGPAPG)-3') (nucleic acid)
Unique Ligands	BAP

Explore in 3D

1EY1 \| pdb_00001ey1	Download File View File

SOLUTION STRUCTURE OF ESCHERICHIA COLI NUSB

Altieri, A.S., Mazzulla, M.J., Horita, D.A., Coats, R.H., Wingfield, P.T., Byrd, R.A.

(2000) Nat Struct Biol 7: 470-474

Released	2000-06-14
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	ANTITERMINATION FACTOR NUSB (protein)

Explore in 3D

1G6Z \| pdb_00001g6z	Download File View File

SOLUTION STRUCTURE OF THE CLR4 CHROMO DOMAIN

Horita, D.A., Ivanova, A.V., Altieri, A.S., Klar, A.J., Byrd, R.A.

(2001) J Mol Biology 307: 861-870

Released	2001-04-04
Method	SOLUTION NMR
Organisms	Schizosaccharomyces pombe
Macromolecule	CLR4 PROTEIN (protein)

Explore in 3D

1GA3 \| pdb_00001ga3	Download File View File

NMR STRUCTURE OF INTERLEUKIN-13

Eisenmesser, E.Z., Horita, D.A., Altieri, A.S., Byrd, R.A.

(2001) J Mol Biology 310: 231-241

Released	2001-07-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interleukin-13 (protein)

Explore in 3D

1KBE \| pdb_00001kbe	Download File View File

Solution structure of the cysteine-rich C1 domain of Kinase Suppressor of Ras

Zhou, M., Horita, D.A., Waugh, D.S., Byrd, R.A., Morrison, D.K.

(2002) J Mol Biology 315: 435-446

Released	2002-01-23
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Kinase Suppressor of Ras (protein)
Unique Ligands	ZN

Explore in 3D

1KBF \| pdb_00001kbf	Download File View File

Solution Structure of the Cysteine-Rich C1 Domain of Kinase Suppressor of Ras

Zhou, M., Horita, D.A., Waugh, D.S., Byrd, R.A., Morrison, D.K.

(2002) J Mol Biology 315: 435-446

Released	2002-01-23
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Kinase suppressor of Ras 1 (protein)
Unique Ligands	ZN

Explore in 3D

1NK1 \| pdb_00001nk1	Download File View File

NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR/SCATTER FACTOR (HGF/SF) AT 2.5 ANGSTROM RESOLUTION

Chirgadze, D.Y., Hepple, J.P., Zhou, H., Byrd, R.A., Blundell, T.L., Gherardi, E.

(1999) Nat Struct Biol 6: 72-79

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (HEPATOCYTE GROWTH FACTOR PRECURSOR) (protein)

Explore in 3D

2HGF \| pdb_00002hgf	Download File View File

HAIRPIN LOOP CONTAINING DOMAIN OF HEPATOCYTE GROWTH FACTOR, NMR, MINIMIZED AVERAGE STRUCTURE

Zhou, H., Mazzulla, M.J., Kaufman, J.D., Stahl, S.J., Wingfield, P.T., Rubin, J.S., Bottaro, D.P., Byrd, R.A.

(1998) Structure 6: 109-116

Released	1998-06-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HEPATOCYTE GROWTH FACTOR (protein)

Explore in 3D

2JMV \| pdb_00002jmv	Download File View File

Solution structure of scytovirin refined against residual dipolar couplings

McFeeters, R.L., Byrd, R.A.

(2007) J Mol Biology 369: 451-461

Released	2007-06-12
Method	SOLUTION NMR
Organisms	Scytonema varium
Macromolecule	Scytovirin (protein)

Explore in 3D

2JR0 \| pdb_00002jr0	Download File View File

Solution structure of NusB from Aquifex Aeolicus

Das, R., Loss, S., Li, J., Tarasov, S., Wingfield, P., Waugh, D.S., Byrd, R.A., Altieri, A.S.

(2008) J Mol Biology 376: 705-720

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Aquifex aeolicus
Macromolecule	N utilization substance protein B homolog (protein)

Explore in 3D

2LVN \| pdb_00002lvn	Download File View File

Structure of the gp78 CUE domain

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein)

Explore in 3D

2LVO \| pdb_00002lvo	Download File View File

Structure of the gp78CUE domain bound to monubiquitin

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin (protein)

Explore in 3D

2LVP \| pdb_00002lvp	Download File View File

gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin (protein)

Explore in 3D

2LVQ \| pdb_00002lvq	Download File View File

gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin (protein)

Explore in 3D

3H8K \| pdb_00003h8k	Download File View File

Crystal structure of Ube2g2 complxed with the G2BR domain of gp78 at 1.8-A resolution

Kalathur, R.C., Das, R., Li, J., Byrd, R.A., Ji, X.

(2009) Mol Cell 34: 674-685

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Autocrine motility factor receptor, isoform 2 (protein) Ubiquitin-conjugating enzyme E2 G2 (protein)

Explore in 3D

4HCK \| pdb_00004hck	Download File View File

HUMAN HCK SH3 DOMAIN, NMR, 25 STRUCTURES

Horita, D.A., Baldisseri, D.M., Zhang, W., Altieri, A.S., Smithgall, T.E., Gmeiner, W.H., Byrd, R.A.

(1998) J Mol Biology 278: 253-265

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC CELL KINASE (protein)

Explore in 3D

4LAD \| pdb_00004lad	Download File View File

Crystal Structure of the Ube2g2:RING-G2BR complex

Liang, Y.-H., Li, J., Das, R., Byrd, R.A., Ji, X.

(2013) EMBO J 32: 2504-2516

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin-conjugating enzyme E2 G2 (protein)
Unique Ligands	OXL, ZN

Explore in 3D

5HCK \| pdb_00005hck	Download File View File

HUMAN HCK SH3 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE

Horita, D.A., Baldisseri, D.M., Zhang, W., Altieri, A.S., Smithgall, T.E., Gmeiner, W.H., Byrd, R.A.

(1998) J Mol Biology 278: 253-265

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HEMATOPOIETIC CELL KINASE (protein)

1 to 18 of 18 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DXA | pdb_00001dxa

BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA

1EY1 | pdb_00001ey1

SOLUTION STRUCTURE OF ESCHERICHIA COLI NUSB

1G6Z | pdb_00001g6z

SOLUTION STRUCTURE OF THE CLR4 CHROMO DOMAIN

1GA3 | pdb_00001ga3

NMR STRUCTURE OF INTERLEUKIN-13

1KBE | pdb_00001kbe

Solution structure of the cysteine-rich C1 domain of Kinase Suppressor of Ras

1KBF | pdb_00001kbf

Solution Structure of the Cysteine-Rich C1 Domain of Kinase Suppressor of Ras

1NK1 | pdb_00001nk1

NK1 FRAGMENT OF HUMAN HEPATOCYTE GROWTH FACTOR/SCATTER FACTOR (HGF/SF) AT 2.5 ANGSTROM RESOLUTION

2HGF | pdb_00002hgf

HAIRPIN LOOP CONTAINING DOMAIN OF HEPATOCYTE GROWTH FACTOR, NMR, MINIMIZED AVERAGE STRUCTURE

2JMV | pdb_00002jmv

Solution structure of scytovirin refined against residual dipolar couplings

2JR0 | pdb_00002jr0

Solution structure of NusB from Aquifex Aeolicus

2LVN | pdb_00002lvn

Structure of the gp78 CUE domain

2LVO | pdb_00002lvo

Structure of the gp78CUE domain bound to monubiquitin

2LVP | pdb_00002lvp

gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin

2LVQ | pdb_00002lvq

gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin

3H8K | pdb_00003h8k

Crystal structure of Ube2g2 complxed with the G2BR domain of gp78 at 1.8-A resolution

4HCK | pdb_00004hck

HUMAN HCK SH3 DOMAIN, NMR, 25 STRUCTURES

4LAD | pdb_00004lad

Crystal Structure of the Ube2g2:RING-G2BR complex

5HCK | pdb_00005hck

HUMAN HCK SH3 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DXA | pdb_00001dxa

1EY1 | pdb_00001ey1

1G6Z | pdb_00001g6z

1GA3 | pdb_00001ga3

1KBE | pdb_00001kbe

1KBF | pdb_00001kbf

1NK1 | pdb_00001nk1

2HGF | pdb_00002hgf

2JMV | pdb_00002jmv

2JR0 | pdb_00002jr0

2LVN | pdb_00002lvn

2LVO | pdb_00002lvo

2LVP | pdb_00002lvp

2LVQ | pdb_00002lvq

3H8K | pdb_00003h8k

4HCK | pdb_00004hck

4LAD | pdb_00004lad

5HCK | pdb_00005hck