RCSB PDB: Search

107D \| pdb_0000107d	Download File View File

SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX

Lin, C.H., Patel, D.J.

(1995) J Mol Biology 248: 162-179

Released	1995-05-08
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPCPTPTPTPTPC)-3') (nucleic acid) DNA (5'-D(GPAPAPAPAPGPG)-3') (nucleic acid)
Unique Ligands	DUO

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1AW4 \| pdb_00001aw4	Download File View File

STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES

Lin, C.H., Patel, D.J.

(1997) Chem Biol 4: 817-832

Released	1998-04-15
Method	SOLUTION NMR
Macromolecule	ATP-BINDING DNA APTAMER (nucleic acid)
Unique Ligands	AMP

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1HWV \| pdb_00001hwv	Download File View File

MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY

Patel, D.J., Lin, C.H., Geacintov, N.E., Broyde, S., Huang, X., Kolbanovskii, A., Hingerty, B.E., Amin, S.

(2001) J Mol Biology 306: 1059-1080

Released	2001-03-21
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPAPTPCPGPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPCPGPAPTPGPG)-3' (nucleic acid)
Unique Ligands	BPI

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1HX4 \| pdb_00001hx4	Download File View File

MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY

Patel, D.J., Lin, C.H., Geacintov, N.E., Broyde, S., Huang, X., Kolbanovskii, A., Hingerty, B.E., Amin, S.

(2001) J Mol Biology 306: 1059-1080

Released	2001-03-21
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPAPTPCPGPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPCPGPAPTPGPG)-3' (nucleic acid)
Unique Ligands	BPJ

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1JJS \| pdb_00001jjs	Download File View File

NMR Structure of IBiD, A Domain of CBP/p300

Lin, C.H., Hare, B.J., Wagner, G., Harrison, S.C., Maniatis, T., Fraenkel, E.

(2001) Mol Cell 8: 581-590

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	CREB-BINDING PROTEIN (protein)

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1OLD \| pdb_00001old	Download File View File

NMR STRUCTURE OF 24-MER DEOXYRIBONUCLEIC ACID, 7 STRUCTURES

Lin, C.H., Patel, D.J.

(1996) Nat Struct Biol 3: 1046-1050

Released	1997-04-21
Method	SOLUTION NMR
Macromolecule	DNA (GATCGAAACGTAGCGCCTTCGATC) (nucleic acid)
Unique Ligands	AAR

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2ARG \| pdb_00002arg	Download File View File

FORMATION OF AN AMINO ACID BINDING POCKET THROUGH ADAPTIVE ZIPPERING-UP OF A LARGE DNA HAIRPIN LOOP, NMR, 9 STRUCTURES

Lin, C.H., Wang, W., Jones, R.A., Patel, D.J.

(1998) Chem Biol 5: 555-572

Released	1999-03-23
Method	SOLUTION NMR
Macromolecule	DNA APTAMER [5'-D (TPGPAPCPCPAPGPGPGPCPAPAPAPCPGPGPTPAP* GPGPTPGPAPGPTPGPGPTPCP*A)-3'] (nucleic acid)
Unique Ligands	AAR

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2HWQ \| pdb_00002hwq	Download File View File

Structural basis for the structure-activity relationships of Peroxisome Proliferator-Activated Receptor agonists

Peng, Y.H., Lu, I.L., Mahindroo, N., Lin, C.H., Hsieh, H.P., Wu, S.Y.

(2006) J Med Chem 49: 6421-6424

Released	2007-08-07
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRY

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2HWR \| pdb_00002hwr	Download File View File

Structural basis for the structure-activity relationships of Peroxisome Proliferator-Activated Receptor agonists

Peng, Y.H., Lu, I.L., Mahindroo, N., Lin, C.H., Hsieh, H.P., Wu, S.Y.

(2006) J Med Chem 49: 6421-6424

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRD

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2IO7 \| pdb_00002io7	Download File View File

E. coli Bifunctional glutathionylspermidine synthetase/amidase Incomplex with Mg2+ and AMPPNP

Pai, C.H., Chiang, B.Y., Ko, T.P., Chong, C.M., Yen, F.J., Coward, J.K., Wang, A.H.-J., Lin, C.H.

(2006) EMBO J 25: 5970-5982

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional glutathionylspermidine synthetase/amidase (protein)
Unique Ligands	ANP, MG

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2IO8 \| pdb_00002io8	Download File View File

E. coli Bifunctional glutathionylspermidine synthetase/amidase Incomplex with Mg2+ and ADP

Pai, C.H., Chiang, B.Y., Ko, T.P., Chou, C.C., Chong, C.M., Yen, F.J., Coward, J.K., Wang, A.H.-J., Lin, C.H.

(2006) EMBO J 25: 5970-5982

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional glutathionylspermidine synthetase/amidase (protein)
Unique Ligands	ADP, CYS, MG

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2IO9 \| pdb_00002io9	Download File View File

E. coli Bifunctional glutathionylspermidine synthetase/amidase Incomplex with Mg2+ ,GSH and ADP

Pai, C.H., Chiang, B.Y., Ko, T.P., Chou, C.C., Chong, C.M., Yen, F.J., Coward, J.K., Wang, A.H.-J., Lin, C.H.

(2006) EMBO J 25: 5970-5982

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional glutathionylspermidine synthetase/amidase (protein)
Unique Ligands	ADP, GSH, MG

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2IOA \| pdb_00002ioa	Download File View File

E. coli Bifunctional glutathionylspermidine synthetase/amidase Incomplex with Mg2+ and ADP and phosphinate inhibitor

Pai, C.H., Chiang, B.Y., Ko, T.P., Chou, C.C., Chong, C.M., Yen, F.J., Coward, J.K., Wang, A.H.-J., Lin, C.H.

(2006) EMBO J 25: 5970-5982

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional glutathionylspermidine synthetase/amidase (protein)
Unique Ligands	ADP, GGA, MG

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2IOB \| pdb_00002iob	Download File View File

E. coli Bifunctional glutathionylspermidine synthetase/amidase Apo protein

Pai, C.H., Chiang, B.Y., Ko, T.P., Chou, C.C., Chong, C.M., Yen, F.J., Coward, J.K., Wang, A.H.-J., Lin, C.H.

(2006) EMBO J 25: 5970-5982

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional glutathionylspermidine synthetase/amidase (protein)

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2LZK \| pdb_00002lzk	Download File View File

NMR solution structure of an N2-guanine DNA adduct derived from the potent tumorigen dibenzo[a,l]pyrene: Intercalation from the minor groove with ruptured Watson-Crick base pairing

Tang, Y., Liu, Z., Ding, S., Lin, C.H., Cai, Y., Rodriguez, F.A., Sayer, J.M., Jerina, D.M., Amin, S., Broyde, S., Geacintov, N.E.

(2012) Biochemistry 51: 9751-9762

Released	2012-11-21
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPCPAPTPCPGPCPTPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPAPGPCPGPAPTPGPG)-3') (nucleic acid)
Unique Ligands	14L

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2MIV \| pdb_00002miv	Download File View File

NMR studies of N2-guanine adducts derived from the tumorigen dibenzo[a,l]pyrene in DNA: Impact of adduct stereochemistry, size, and local DNA structure on solution conformations

Rodriguez, F.A., Liu, Z., Lin, C.H., Ding, S., Cai, Y., Kolbanovskiy, A., Kolbanovskiy, M., Amin, S., Broyde, S., Geacintov, N.E.

(2014) Biochemistry 53: 1827-1841

Released	2014-04-02
Method	SOLUTION NMR
Macromolecule	DNA_(5'-D(CPCPAPTPCPGPCPTPAPCPC)-3') (nucleic acid) DNA_(5'-D(GPGPTPAPGPGPAPTPGP*G)-3') (nucleic acid)
Unique Ligands	2QL

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2MIW \| pdb_00002miw	Download File View File

Nuclear magnetic resonance studies of N2-guanine adducts derived from the tumorigen dibenzo[a,l]pyrene in DNA: Impact of adduct stereochemistry, size, and local DNA structure on solution conformations

Rodriguez, F.A., Liu, Z., Lin, C.H., Ding, S., Cai, Y., Kolbanovskiy, A., Kolbanovskiy, M., Amin, S., Broyde, S., Geacintov, N.E.

(2014) Biochemistry 53: 1827-1841

Released	2014-04-02
Method	SOLUTION NMR
Macromolecule	DNA_(5'-D(CPCPAPTPCPGPCPTPAPCPC)-3') (nucleic acid) DNA_(5'-D(GPGPTPAPGPCPGPAPTPGPG)-3') (nucleic acid)
Unique Ligands	2QL

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2XIB \| pdb_00002xib	Download File View File

CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH DEOXYFUCONOJIRIMYCIN

Lammerts van Bueren, A., Popat, S.D., Lin, C.H., Davies, G.J.

(2010) Chembiochem 11: 1971

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	ALPHA-L-FUCOSIDASE (protein)
Unique Ligands	DFU, GOL, SO4, TRS

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2XII \| pdb_00002xii	Download File View File

CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH AN EXTENDED 9-FLUORENONE IMINOSUGAR INHIBITOR

Lammerts van Bueren, A., Popat, S.D., Lin, C.H., Davies, G.J.

(2010) Chembiochem 11: 1971

Released	2010-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	ALPHA-L-FUCOSIDASE (protein)
Unique Ligands	GOL, SO4, TA9, TYR

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3O98 \| pdb_00003o98	Download File View File

Glutathionylspermidine synthetase/amidase C59A complex with ADP and Gsp

Pai, C.H., Lin, C.H., Wang, A.H.-J.

(2011) Protein Sci 20: 557-566

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Bifunctional glutathionylspermidine synthetase/amidase (protein)
Unique Ligands	ADP, MG, TS5

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3PHJ \| pdb_00003phj	Download File View File

Shikimate 5-Dehydrogenase (aroE) from Helicobacter pylori in complex with 3-Dehydroshikimate

Cheng, W.C., Lin, S.C., Lin, C.H., Wang, W.C.

To be published

Released	2011-11-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Shikimate dehydrogenase (protein)
Unique Ligands	DHK

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3PHL \| pdb_00003phl	Download File View File

The apo-form UDP-glucose 6-dehydrogenase

Chen, Y.Y., Ko, T.P., Lin, C.H., Chen, W.H., Wang, A.H.J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Macromolecule	UDP-glucose 6-dehydrogenase (protein)

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3UYY \| pdb_00003uyy	Download File View File

Crystal Structures of Branched-Chain Aminotransferase from Deinococcus radiodurans Complexes with alpha-Ketoisocaproate and L-Glutamate Suggest Its Radio-Resistance for Catalysis

Chen, C.D., Huang, Y.C., Chuankhayan, P., Hsieh, Y.C., Huang, T.F., Lin, C.H., Guan, H.H., Liu, M.Y., Chang, W.C., Chen, C.J.

(2012) J Bacteriol 194: 6206-6216

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Branched-chain-amino-acid aminotransferase (protein)
Unique Ligands	PLP

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3UZB \| pdb_00003uzb	Download File View File

Crystal Structures of Branched-Chain Aminotransferase from Deinococcus radiodurans Complexes with alpha-Ketoisocaproate and L-Glutamate Suggest Its Radio-Resistance for Catalysis

Chen, C.D., Huang, Y.C., Chuankhayan, P., Hsieh, Y.C., Huang, T.F., Lin, C.H., Guan, H.H., Liu, M.Y., Chang, W.C., Chen, C.J.

(2012) J Bacteriol 194: 6206-6216

Released	2012-12-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Deinococcus radiodurans
Macromolecule	Branched-chain-amino-acid aminotransferase (protein)
Unique Ligands	COI, PLP

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3UZO \| pdb_00003uzo	Download File View File

Crystal Structures of Branched-Chain Aminotransferase from Deinococcus radiodurans Complexes with alpha-Ketoisocaproate and L-Glutamate Suggest Its Radio-Resistance for Catalysis

Chen, C.D., Huang, Y.C., Chuankhayan, P., Hsieh, Y.C., Huang, T.F., Lin, C.H., Guan, H.H., Liu, M.Y., Chang, W.C., Chen, C.J.

(2012) J Bacteriol 194: 6206-6216

Released	2012-12-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Deinococcus radiodurans
Macromolecule	Branched-chain-amino-acid aminotransferase (protein)
Unique Ligands	GLU, PLP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

107D | pdb_0000107d

1AW4 | pdb_00001aw4

1HWV | pdb_00001hwv

1HX4 | pdb_00001hx4

1JJS | pdb_00001jjs

1OLD | pdb_00001old

2ARG | pdb_00002arg

2HWQ | pdb_00002hwq

2HWR | pdb_00002hwr

2IO7 | pdb_00002io7

2IO8 | pdb_00002io8

2IO9 | pdb_00002io9

2IOA | pdb_00002ioa

2IOB | pdb_00002iob

2LZK | pdb_00002lzk

2MIV | pdb_00002miv

2MIW | pdb_00002miw

2XIB | pdb_00002xib

2XII | pdb_00002xii

3O98 | pdb_00003o98

3PHJ | pdb_00003phj

3PHL | pdb_00003phl

3UYY | pdb_00003uyy

3UZB | pdb_00003uzb

3UZO | pdb_00003uzo