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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.1.3.3

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Mycobacterium avium 104 (11)
	Homo sapiens (7)
	Bacillus subtilis subsp. subtilis str. 168 (6)
	Methanocaldococcus jannaschii (6)
	Mus musculus (5)
	Bacillus subtilis (4)
	Brucella melitensis (2)
	Hydrogenobacter thermophilus TK-6 (2)
	Pseudomonas aeruginosa PAO1 (2)
	Anaerococcus prevotii DSM 20548 (1)

More...

Taxonomy

	Bacteria (33)
	Eukaryota (12)
	Archaea (9)

Experimental Method

X-RAY DIFFRACTION (54)

Polymer Entity Type

Protein (54)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (24)
	2.0 - 2.5 (18)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (12)
	2005 - 2009 (5)
	2010 - 2014 (20)
	2015 - 2019 (12)
	2020 - 2024 (5)

Enzyme Classification Name

Hydrolases (54)

Symmetry Type

	Asymmetric (27)
	Cyclic (27)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (23)
	Artifacts (6)
	All alpha proteins (4)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 54 Structures

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1F5S \| pdb_00001f5s	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII

Wang, W., Kim, R., Jancarik, J., Yokota, H., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2001) Structure 9: 65-72

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (PSP) (protein)
Unique Ligands	MG, PO4

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1J97 \| pdb_00001j97	Download File View File

Phospho-Aspartyl Intermediate Analogue of Phosphoserine phosphatase

Cho, H., Wang, W., Kim, R., Yokota, H., Damo, S., Kim, S.-H., Wemmer, D., Kustu, S., Yan, D., Berkeley Structural Genomics Center (BSGC)

(2001) Proc Natl Acad Sci U S A 98: 8525-8530

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Phosphoserine Phosphatase (protein)
Unique Ligands	MG, PO4

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1L7M \| pdb_00001l7m	Download File View File

HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX)

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Phosphoserine Phosphatase (protein)
Unique Ligands	MG, PO4

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1L7N \| pdb_00001l7n	Download File View File

TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM FLUORIDE COMPLEX)

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	AF3, ALF, MG, SO4

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1L7O \| pdb_00001l7o	Download File View File

CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE IN APO FORM

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	ACY, ZN

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1L7P \| pdb_00001l7p	Download File View File

SUBSTRATE BOUND PHOSPHOSERINE PHOSPHATASE COMPLEX STRUCTURE

Wang, W., Cho, H.S., Kim, R., Jancarik, J., Yokota, H., Nguyen, H.H., Grigoriev, I.V., Wemmer, D.E., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Mol Biology 319: 421-431

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	PO4, SEP

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1L8L \| pdb_00001l8l	Download File View File

Molecular basis for the local confomational rearrangement of human phosphoserine phosphatase

Kim, H.Y., Heo, Y.S., Kim, J.H., Park, M.H., Moon, J., Park, S.Y., Lee, T.G., Jeon, Y.H., Ro, S., Hwang, K.Y.

(2002) J Biological Chem 277: 46651-46658

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	APO

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1L8O \| pdb_00001l8o	Download File View File

Molecular basis for the local conformational rearrangement of human phosphoserine phosphatase

Kim, H.Y., Heo, Y.S., Kim, J.H., Park, M.H., Moon, J., Park, S.Y., Lee, T.G., Jeon, Y.H., Ro, S., Hwang, K.Y.

(2002) J Biological Chem 277: 46651-46658

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	PO4, SER

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1NNL \| pdb_00001nnl	Download File View File

Crystal structure of Human Phosphoserine Phosphatase

Peeraer, Y., Rabijns, A., Verboven, C., Collet, J.F., Van Schaftingen, E., De Ranter, C.

(2003) Acta Crystallogr D Biol Crystallogr 59: 971-977

Released	2003-06-03
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	L-3-phosphoserine phosphatase (protein)
Unique Ligands	CA, CL

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1RKU \| pdb_00001rku	Download File View File

Crystal Structure of ThrH gene product of Pseudomonas Aeruginosa

Singh, S.K., Yang, K., Subramanian, K., Karthikeyan, S., Huynh, T., Zhang, X., Phillips, M.A., Zhang, H.

(2004) J Biological Chem 279: 13166-13173

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	homoserine kinase (protein)
Unique Ligands	EDO, MG

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1RKV \| pdb_00001rkv	Download File View File

Structure of Phosphate complex of ThrH from Pseudomonas aeruginosa

Singh, S.K., Yang, K., Subramanian, K., Karthikeyan, S., Huynh, T., Zhang, X., Phillips, M.A., Zhang, H.

(2004) J Biological Chem 279: 13166-13173

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	homoserine kinase (protein)
Unique Ligands	EDO, MG, PO4

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1W53 \| pdb_00001w53	Download File View File

Kinase recruitment domain of the stress phosphatase RsbU

Delumeau, O., Dutta, S., Brigulla, M., Kuhnke, G., Hardwick, S.W., Voelker, U., Yudkin, M.D., Lewis, R.J.

(2004) J Biological Chem 279: 40927

Released	2004-08-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	PHOSPHOSERINE PHOSPHATASE RSBU (protein)
Unique Ligands	GOL, XE

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2J6Y \| pdb_00002j6y	Download File View File

Structural and Functional Characterisation of partner switching regulating the environmental stress response in Bacillus subtilis

Hardwick, S.W., Pane-Farre, J., Delumeau, O., Marles-Wright, J., Murray, J.W., Hecker, M., Lewis, R.J.

(2007) J Biological Chem 282: 11562-11572

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus subtilis
Macromolecule	PHOSPHOSERINE PHOSPHATASE RSBU (protein)

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2J6Z \| pdb_00002j6z	Download File View File

Structural and functional characterisation of partner-switching regulating the environmental stress response in B. subtilis

Hardwick, S.W., Pane-Farre, J., Delumeau, O., Marles-Wright, J., Murray, J.W., Hecker, M., Lewis, R.J.

(2007) J Biological Chem 282: 11562-11572

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis
Macromolecule	PHOSPHOSERINE PHOSPHATASE RSBU (protein)

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2J70 \| pdb_00002j70	Download File View File

Structural and functional characterisation of partner-switching regulating the environmental stress response in B. subtilis

Hardwick, S.W., Pane-Farre, J., Delumeau, O., Marles-Wright, J., Murray, J.W., Hecker, M., Lewis, R.J.

(2007) J Biological Chem 282: 11562-11572

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis
Macromolecule	PHOSPHOSERINE PHOSPHATASE RSBU (protein)

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2OM6 \| pdb_00002om6	Download File View File

Hypothetical Protein (Probable Phosphoserine Phosph (PH0253) from Pyrococcus Horikoshii OT3

Jeyakanthan, J., Vaijayanthimala, S., Gayathri, D., Velmurugan, D., Baba, S., Ebihara, A., Shinkai, A., Kuramitsu, S., Shiro, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Probable phosphoserine phosphatase (protein)
Unique Ligands	CL, MG, SO4

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3KD3 \| pdb_00003kd3	Download File View File

Crystal structure of a phosphoserine phosphohydrolase-like protein from Francisella tularensis subsp. tularensis SCHU S4

Nocek, B., Zhou, M., Peterson, S., Anderson, W., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2009-12-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Francisella tularensis subsp. tularensis
Macromolecule	Phosphoserine phosphohydrolase-like protein (protein)
Unique Ligands	GOL, MG

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3M1Y \| pdb_00003m1y	Download File View File

Crystal Structure of a Phosphoserine phosphatase (SerB) from Helicobacter pylori

Syed Ibrahim, B., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Helicobacter pylori
Macromolecule	Phosphoserine phosphatase (SerB) (protein)
Unique Ligands	CL, MG

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3N28 \| pdb_00003n28	Download File View File

Crystal structure of probable phosphoserine phosphatase from vibrio cholerae, unliganded form

Patskovsky, Y., Ramagopal, U., Toro, R., Rutter, M., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio cholerae
Macromolecule	Phosphoserine phosphatase (protein)
Unique Ligands	SO4

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3P96 \| pdb_00003p96	Download File View File

Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium, native form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) J Struct Funct Genomics 12: 83-95

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mycobacterium avium 104
Macromolecule	Phosphoserine phosphatase SerB (protein)
Unique Ligands	CL, EDO, MG

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3PSN \| pdb_00003psn	Download File View File

Crystal structure of mouse VPS29 complexed with Mn2+

Swarbrick, J., Shaw, D., Chhabra, S., Ghai, R., Valkov, E., Norwood, S., Collins, B.

To be published

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Vacuolar protein sorting-associated protein 29 (protein)
Unique Ligands	MN

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3W40 \| pdb_00003w40	Download File View File

Crystal structure of RsbX in complex with magnesium in space group P1

Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1392-1399

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Phosphoserine phosphatase RsbX (protein)
Unique Ligands	MG

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3W41 \| pdb_00003w41	Download File View File

Crystal structure of RsbX in complex with magnesium in space group P21

Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1392-1399

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Phosphoserine phosphatase RsbX (protein)
Unique Ligands	MG

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3W42 \| pdb_00003w42	Download File View File

Crystal structure of RsbX in complex with manganese in space group P1

Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1392-1399

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Phosphoserine phosphatase RsbX (protein)
Unique Ligands	MN

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3W43 \| pdb_00003w43	Download File View File

Crystal structure of RsbX in complex with manganese in space group P21

Teh, A.H., Makino, M., Baba, S., Shimizu, N., Yamamoto, M., Kumasaka, T.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1392-1399

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Phosphoserine phosphatase RsbX (protein)
Unique Ligands	MN

1 to 25 of 54 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1F5S | pdb_00001f5s

1J97 | pdb_00001j97

1L7M | pdb_00001l7m

1L7N | pdb_00001l7n

1L7O | pdb_00001l7o

1L7P | pdb_00001l7p

1L8L | pdb_00001l8l

1L8O | pdb_00001l8o

1NNL | pdb_00001nnl

1RKU | pdb_00001rku

1RKV | pdb_00001rkv

1W53 | pdb_00001w53

2J6Y | pdb_00002j6y

2J6Z | pdb_00002j6z

2J70 | pdb_00002j70

2OM6 | pdb_00002om6

3KD3 | pdb_00003kd3

3M1Y | pdb_00003m1y

3N28 | pdb_00003n28

3P96 | pdb_00003p96

3PSN | pdb_00003psn

3W40 | pdb_00003w40

3W41 | pdb_00003w41

3W42 | pdb_00003w42

3W43 | pdb_00003w43