RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 5.1.1.1

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (11)
	Bacillus subtilis subsp. subtilis str. 168 (6)
	Escherichia coli K-12 (6)
	Bacillus subtilis (3)
	Clostridioides difficile 630 (3)
	Enterococcus faecalis (3)
	Mycobacterium tuberculosis H37Rv (3)
	Staphylococcus aureus subsp. aureus Mu50 (3)
	Streptomyces coelicolor A3(2) (3)
	Streptomyces lavendulae (3)

More...

Taxonomy

	Bacteria (73)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (74)

Polymer Entity Type

Protein (74)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (23)
	2.0 - 2.5 (32)
	2.5 - 3.0 (11)
	3.0 - 3.5 (4)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (9)
	2005 - 2009 (22)
	2010 - 2014 (13)
	2015 - 2019 (17)
	2020 - 2024 (4)
	2025 - 2029 (6)

Enzyme Classification Name

Isomerases (74)

Symmetry Type

	Cyclic (72)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	All beta proteins (12)
	Artifacts (5)

AllSelected

1 to 25 of 74 Structures

Page 1 of 3

Sort by

Explore in 3D

1BD0 \| pdb_00001bd0	Download File View File

ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE

Stamper, G.F., Morollo, A.A., Ringe, D.

(1998) Biochemistry 37: 10438-10445

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALANINE RACEMASE (protein)
Unique Ligands	IN5

Explore in 3D

1EPV \| pdb_00001epv	Download File View File

ALANINE RACEMASE WITH BOUND INHIBITOR DERIVED FROM D-CYCLOSERINE

Fenn, T.D., Stamper, G.F., Morollo, A.A., Ringe, D.

(2003) Biochemistry 42: 5775-5783

Released	2003-01-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALANINE RACEMASE (protein)
Unique Ligands	DCS

Explore in 3D

1FTX \| pdb_00001ftx	Download File View File

Crystal structure of alanine racemase in complex with D-alanine phosphonate

Stamper, G.F., Ringe, D.

Released	2003-01-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALANINE RACEMASE (protein)
Unique Ligands	EPC

Explore in 3D

1L6F \| pdb_00001l6f	Download File View File

Alanine racemase bound with N-(5'-phosphopyridoxyl)-L-alanine

Watanabe, A., Yoshimura, T., Mikami, B., Hayashi, H., Kagamiyama, H., Esaki, N.

(2002) J Biological Chem 277: 19166-19172

Released	2002-06-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alanine racemase (protein)
Unique Ligands	PP3

Explore in 3D

1L6G \| pdb_00001l6g	Download File View File

Alanine racemase bound with N-(5'-phosphopyridoxyl)-D-alanine

Watanabe, A., Yoshimura, T., Mikami, B., Hayashi, H., Kagamiyama, H., Esaki, N.

(2002) J Biological Chem 277: 19166-19172

Released	2002-06-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	alanine racemase (protein)
Unique Ligands	PDD

Explore in 3D

1NIU \| pdb_00001niu	Download File View File

ALANINE RACEMASE WITH BOUND INHIBITOR DERIVED FROM L-CYCLOSERINE

Fenn, T.D., Stamper, G.F., Morollo, A.A., Ringe, D.

(2003) Biochemistry 42: 5775-5783

Released	2003-09-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alanine Racemase (protein)
Unique Ligands	DCS

Explore in 3D

1RCQ \| pdb_00001rcq	Download File View File

The 1.45 A crystal structure of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms

Le Magueres, P., Im, H., Dvorak, A., Strych, U., Benedik, M., Krause, K.L.

(2003) Biochemistry 42: 14752-14761

Released	2004-06-01
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	catabolic alanine racemase DadX (protein)
Unique Ligands	DLY, PLP

Explore in 3D

1SFT \| pdb_00001sft	Download File View File

ALANINE RACEMASE

Shaw, J.P., Petsko, G.A., Ringe, D.

(1997) Biochemistry 36: 1329-1342

Released	1997-02-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alanine racemase (protein)
Unique Ligands	ACT

Explore in 3D

1VFH \| pdb_00001vfh	Download File View File

Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae

Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.

(2004) J Biological Chem 279: 46153-46161

Released	2004-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces lavendulae
Macromolecule	alanine racemase (protein)
Unique Ligands	PLP

Explore in 3D

1VFS \| pdb_00001vfs	Download File View File

Crystal structure of D-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae

Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.

(2004) J Biological Chem 279: 46153-46161

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces lavendulae
Macromolecule	alanine racemase (protein)
Unique Ligands	CL, DCS

Explore in 3D

1VFT \| pdb_00001vft	Download File View File

Crystal structure of L-cycloserine-bound form of alanine racemase from D-cycloserine-producing Streptomyces lavendulae

Noda, M., Matoba, Y., Kumagai, T., Sugiyama, M.

(2004) J Biological Chem 279: 46153-46161

Released	2004-09-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptomyces lavendulae
Macromolecule	alanine racemase (protein)
Unique Ligands	CL, DCS

Explore in 3D

1XFC \| pdb_00001xfc	Download File View File

The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site

LeMagueres, P., Im, H., Ebalunode, J., Strych, U., Benedik, M.J., Briggs, J.M., Kohn, H., Krause, K.L.

(2005) Biochemistry 44: 1471-1481

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Alanine racemase (protein)
Unique Ligands	PLP

Explore in 3D

1XQK \| pdb_00001xqk	Download File View File

Effect of a Y265F Mutant on the Transamination Based Cycloserine Inactivation of Alanine Racemase

Fenn, T.D., Holyoak, T., Stamper, G.F., Ringe, D.

(2005) Biochemistry 44: 5317-5327

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alanine racemase (protein)
Unique Ligands	PMH

Explore in 3D

1XQL \| pdb_00001xql	Download File View File

Effect of a Y265F Mutant on the Transamination Based Cycloserine Inactivation of Alanine Racemase

Fenn, T.D., Holyoak, T., Stamper, G.F., Ringe, D.

(2005) Biochemistry 44: 5317-5327

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Alanine racemase (protein)
Unique Ligands	4AX, ACY, PLP, PMH, PMP

Explore in 3D

2DY3 \| pdb_00002dy3	Download File View File

Crystal Structure of alanine racemase from Corynebacterium glutamicum

Miyaguchi, I., Sasaki, C., Kato, R., Oikawa, T., Sugio, S.

To be published

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Corynebacterium glutamicum
Macromolecule	Alanine racemase (protein)
Unique Ligands	PLP

Explore in 3D

2ODO \| pdb_00002odo	Download File View File

Crystal structure of Pseudomonas Fluorescens alanine racemase

Tsuge, H., Ohnishi, K., Yokoigawa, K.

To be published

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Alanine racemase (protein)
Unique Ligands	ACT

Explore in 3D

2RGY \| pdb_00002rgy	Download File View File

Crystal structure of transcriptional regulator of LacI family from Burkhoderia phymatum

Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Paraburkholderia phymatum STM815
Macromolecule	Transcriptional regulator, LacI family (protein)

Explore in 3D

2RJG \| pdb_00002rjg	Download File View File

Crystal structure of biosynthetic alaine racemase from Escherichia coli

Wu, D., Hu, T., Zhang, L., Jiang, H., Shen, X.

(2008) Protein Sci 17: 1066-1076

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Alanine racemase (protein)
Unique Ligands	PLP, SO4

Explore in 3D

2RJH \| pdb_00002rjh	Download File View File

Crystal structure of biosynthetic alaine racemase in D-cycloserine-bound form from Escherichia coli

Wu, D., Hu, T., Zhang, L., Jiang, H., Shen, X.

(2008) Protein Sci 17: 1066-1076

Released	2008-07-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Alanine racemase (protein)
Unique Ligands	DCS, SO4

Explore in 3D

2SFP \| pdb_00002sfp	Download File View File

ALANINE RACEMASE WITH BOUND PROPIONATE INHIBITOR

Morollo, A.A., Petsko, G.A., Ringe, D.

(1999) Biochemistry 38: 3293-3301

Released	1999-02-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PROTEIN (ALANINE RACEMASE) (protein)
Unique Ligands	PLP, PPI

Explore in 3D

2VD8 \| pdb_00002vd8	Download File View File

The crystal structure of alanine racemase from Bacillus anthracis (BA0252)

Au, K., Ren, J., Walter, T.S., Harlos, K., Nettleship, J.E., Owens, R.J., Stuart, D.I., Esnouf, R.M., Oxford Protein Production Facility (OPPF), Structural Proteomics in Europe (SPINE)

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 327

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Bacillus anthracis str. Ames
Macromolecule	ALANINE RACEMASE (protein)
Unique Ligands	CL, MG, PLP

Explore in 3D

2VD9 \| pdb_00002vd9	Download File View File

The crystal structure of alanine racemase from Bacillus anthracis (BA0252) with bound L-Ala-P

Au, K., Ren, J., Walter, T.S., Harlos, K., Nettleship, J.E., Owens, R.J., Stuart, D.I., Esnouf, R.M., Oxford Protein Production Facility (OPPF), Structural Proteomics in Europe (SPINE)

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 327

Released	2008-05-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus anthracis str. Ames
Macromolecule	ALANINE RACEMASE (protein)
Unique Ligands	CL, EPC, IN5, MG