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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 5.3.1

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

Homo sapiens (9)

Taxonomy

Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (2)
	2010 - 2014 (1)
	2020 - 2024 (1)

Enzyme Classification Name

Oxidoreductases (9)

Symmetry Type

Cyclic (9)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a/b) (7)

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1 to 9 of 9 Structures

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1M6H \| pdb_00001m6h	Download File View File

Human glutathione-dependent formaldehyde dehydrogenase

Sanghani, P.C., Robinson, H., Bosron, W.F., Hurley, T.D.

(2002) Biochemistry 41: 10778-10786

Released	2002-07-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Glutathione-dependent formaldehyde dehydrogenase (protein)
Unique Ligands	K, PO4, ZN

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1M6W \| pdb_00001m6w	Download File View File

Binary complex of Human glutathione-dependent formaldehyde dehydrogenase and 12-Hydroxydodecanoic acid

Sanghani, P.C., Robinson, H., Bosron, W.F., Hurley, T.D.

(2002) Biochemistry 41: 10778-10786

Released	2002-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Glutathione-dependent formaldehyde dehydrogenase (protein)
Unique Ligands	12H, K, PO4, ZN

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1MA0 \| pdb_00001ma0	Download File View File

Ternary complex of Human glutathione-dependent formaldehyde dehydrogenase with NAD+ and dodecanoic acid

Sanghani, P.C., Robinson, H., Bosron, W.F., Hurley, T.D.

(2002) Biochemistry 41: 10778-10786

Released	2002-08-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Glutathione-dependent formaldehyde dehydrogenase (protein)
Unique Ligands	DAO, K, NAD, PO4, ZN

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1MC5 \| pdb_00001mc5	Download File View File

Ternary complex of Human glutathione-dependent formaldehyde dehydrogenase with S-(hydroxymethyl)glutathione and NADH

Sanghani, P.C., Bosron, W.F., Hurley, T.D.

(2002) Biochemistry 41: 15189-15194

Released	2003-03-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Alcohol dehydrogenase class III chi chain (protein)
Unique Ligands	AHE, K, NAD, PO4, ZN

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1MP0 \| pdb_00001mp0	Download File View File

Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with NAD(H)

Sanghani, P.C., Robinson, H., Hurley, T.D., Bosron, W.F.

(2003) Chem Biol Interact 143: 195-200

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	alcohol dehydrogenase class III chi chain (protein)
Unique Ligands	K, NAD, PO4, ZN

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2FZE \| pdb_00002fze	Download File View File

Crystal structure of the binary complex of human glutathione-dependent formaldehyde dehydrogenase with ADP-ribose

Sanghani, P.C., Robinson, H.

(2006) Biochemistry 45: 4819-4830

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Alcohol dehydrogenase class III chi chain (protein)
Unique Ligands	APR, K, PO4, ZN

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2FZW \| pdb_00002fzw	Download File View File

Structure of the binary complex of the E67L mutant of human glutathione-dependent formaldehyde dehydrogenase with NAD(H)

Sanghani, P.C., Robinson, H.

(2006) Biochemistry 45: 4819-4830

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Alcohol dehydrogenase class III chi chain (protein)
Unique Ligands	K, NAD, PO4, ZN

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3QJ5 \| pdb_00003qj5	Download File View File

S-nitrosoglutathione reductase (GSNOR) in complex with N6022

Chun, L., Kim, H., Sun, X.

(2011) ACS Med Chem Lett 2: 402-406

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Alcohol dehydrogenase class-3 (protein)
Unique Ligands	022, 1PE, K, N2P, NAD, TRS, ZN

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8GV3 \| pdb_00008gv3	Download File View File

The cryo-EM structure of GSNOR with NYY001

Xia, Y., Zhang, Q., Yao, D., Zhao, S., Xie, L., Ji, Y., Cao, Y.

To be published

Released	2023-09-20
Method	ELECTRON MICROSCOPY 3.05 Å
Organisms	Homo sapiens
Macromolecule	Alcohol dehydrogenase class-3 (protein)
Unique Ligands	NAD, WKZ, ZN

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1M6H | pdb_00001m6h

Human glutathione-dependent formaldehyde dehydrogenase

1M6W | pdb_00001m6w

Binary complex of Human glutathione-dependent formaldehyde dehydrogenase and 12-Hydroxydodecanoic acid

1MA0 | pdb_00001ma0

Ternary complex of Human glutathione-dependent formaldehyde dehydrogenase with NAD+ and dodecanoic acid

1MC5 | pdb_00001mc5

Ternary complex of Human glutathione-dependent formaldehyde dehydrogenase with S-(hydroxymethyl)glutathione and NADH

1MP0 | pdb_00001mp0

Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with NAD(H)

2FZE | pdb_00002fze

Crystal structure of the binary complex of human glutathione-dependent formaldehyde dehydrogenase with ADP-ribose

2FZW | pdb_00002fzw

Structure of the binary complex of the E67L mutant of human glutathione-dependent formaldehyde dehydrogenase with NAD(H)

3QJ5 | pdb_00003qj5

S-nitrosoglutathione reductase (GSNOR) in complex with N6022

8GV3 | pdb_00008gv3

The cryo-EM structure of GSNOR with NYY001

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1M6H | pdb_00001m6h

1M6W | pdb_00001m6w

1MA0 | pdb_00001ma0

1MC5 | pdb_00001mc5

1MP0 | pdb_00001mp0

2FZE | pdb_00002fze

2FZW | pdb_00002fzw

3QJ5 | pdb_00003qj5

8GV3 | pdb_00008gv3