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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "ACY"

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	synthetic construct (13)
	Homo sapiens (6)
	Severe acute respiratory syndrome coronavirus 2 (4)
	Escherichia coli (3)
	Escherichia coli K-12 (1)
	HIV-1 M:B_HXB2R (1)
	Pyrococcus furiosus (1)
	Saccharomyces cerevisiae S288C (1)
	Severe acute respiratory syndrome-related coronavirus (1)
	saltans group (1)

Taxonomy

	other sequences (13)
	Eukaryota (8)
	Riboviria (6)
	Bacteria (4)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (12)
	Cyclic (5)

SCOP Classification

	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 17 of 17 Structures

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4KTY \| pdb_00004kty	Download File View File

Fibrin-stabilizing factor with a bound ligand

Stieler, M., Heine, A., Klebe, G.

(2013) Angew Chem Int Ed Engl 52: 11930-11934

Released	2013-12-04
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XIII A chain (protein) Peptide-like ligand (protein)
Unique Ligands	CA, GOL, SO4

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4L3O \| pdb_00004l3o	Download File View File

Crystal Structure of SIRT2 in complex with the macrocyclic peptide S2iL5

Yamagata, K., Nishimasu, H., Ishitani, R., Nureki, O.

(2013) Structure 22: 345-352

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.518 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-2 (protein) cyclic peptide S2iL5 (protein)
Unique Ligands	EDO, MES, ZN

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5CGG \| pdb_00005cgg	Download File View File

Yeast 20S proteasome beta5-G48C mutant in complex with alpha-chloroacetamide 1

Dubiella, C., Groll, M.

(2015) Angew Chem Int Ed Engl 54: 15888-15891

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

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5JFG \| pdb_00005jfg	Download File View File

Structure of humanised RadA-mutant humRadA22F in complex with peptide FHTA

Fischer, G., Marsh, M., Moschetti, T., Sharpe, T., Scott, D., Morgan, M., Ng, H., Skidmore, J., Venkitaraman, A., Abell, C., Blundell, T.L., Hyvonen, M.

To be published

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Pyrococcus furiosus synthetic construct
Macromolecule	DNA repair and recombination protein RadA (protein) PEPTIDE FHTA (protein)
Unique Ligands	CA, DMS

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6WX4 \| pdb_00006wx4	Download File View File

Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR251

Lv, Z., Olsen, S.K.

(2020) Sci Adv 6:

Released	2020-05-20
Method	X-RAY DIFFRACTION 1.655 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 saltans group
Macromolecule	Non-structural protein 3 (protein) VIR251 (protein)
Unique Ligands	ZN

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7EIN \| pdb_00007ein	Download File View File

SARS-CoV-2 main proteinase complex with microbial metabolite leupeptin

Fu, L.F., Feng, Y., Qi, J.X., Gao, G.F.

(2021) mBio 12: e0222021-e0222021

Released	2021-07-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) leupeptin (protein)

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7LFV \| pdb_00007lfv	Download File View File

Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR251

Olsen, S.K., Lv, Z.

(2021) Cell Rep 36: 109754-109754

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	Papain-like protease peptide inhibitor VIR251 (protein) papain-like protease (protein)
Unique Ligands	CL, EDO, NH4, SO4, ZN

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7UJD \| pdb_00007ujd	Download File View File

PSMD2 Structure bound to MC1 and Fab8/14

Johnson, M.C., Bashore, C., Ciferri, C., Dueber, E.C.

(2023) Nat Chem Biol 19: 55-63

Released	2023-01-11
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6

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8C17 \| pdb_00008c17	Download File View File

Crystal structure of TEAD4 in complex with peptide 1

Scheufler, C., Kallen, J.

(2023) ACS Chem Biol 18: 643-651

Released	2023-03-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Stapled peptide (protein) Transcriptional enhancer factor TEF-3 (protein)
Unique Ligands	GOL, MYR

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8F3B \| pdb_00008f3b	Download File View File

HIV-1 gp41 coiled-coil pocket IQN22

Bruun, T.U.J., Tang, S., Fernandez, D., Kim, P.S.

(2023) J Biological Chem 299: 103062-103062

Released	2023-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	IQN22 (protein)

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8GVD \| pdb_00008gvd	Download File View File

SARS-CoV-2 Mpro in complex with D-4-38

Liu, M., Huang, H.

To be published

Released	2023-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE (protein) 3C-like proteinase nsp5 (protein)

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8GVY \| pdb_00008gvy	Download File View File

SARS CoV-2 Mpro in complex with D-3-149

Liu, M., Huang, H.

To be published

Released	2023-09-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE (protein) 3C-like proteinase nsp5 (protein)

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8TLX \| pdb_00008tlx	Download File View File

Crystal structure of MBP and AF9 AHD fusion protein 3AQA in complex with peptidomimetic inhibitor 21a

Yang, Y., Nikolovska-Coleska, Z.

(2024) Protein Sci 33: e5019-e5019

Released	2024-05-29
Method	X-RAY DIFFRACTION 2.097 Å
Organisms	Escherichia coli K-12 Homo sapiens synthetic construct
Macromolecule	MBP and AF9 AHD fusion protein 3AQA (protein) peptidomimetic inhibitor 21a (protein)
Unique Ligands	GOL
Unique branched monosaccharides	GLC

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8VJP \| pdb_00008vjp	Download File View File

Histidine-covalent stapled alpha-helical peptide (155H1) targeting hMcl-1

Muzzarelli, K.M., Assar, Z., Alboreggia, G., Pellecchia, M.

(2024) J Med Chem 67: 8172-8185

Released	2024-05-15
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histidine-covalent stapled alpha-helical peptide (protein) Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	A1AJD, A1AJE