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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 1,973 Structures.

Refinements

Structure Determination Methodology

experimental (1,973)

Scientific Name of Source Organism

	Homo sapiens (1,337)
	Mus musculus (186)
	Bos taurus (143)
	Cricetulus griseus (123)
	synthetic construct (65)
	Rattus norvegicus (52)
	Oryctolagus cuniculus (38)
	Saccharomyces cerevisiae S288C (31)
	Ovis aries (28)
	Arabidopsis thaliana (23)

More...

Taxonomy

	Eukaryota (1,839)
	Bacteria (129)
	Eukaryota (eukaryotes) (84)
	other sequences (70)
	Riboviria (21)
	Varidnaviria (15)
	Duplodnaviria (8)
	Archaea (1)
	Monodnaviria (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (1,681)
	ELECTRON MICROSCOPY (236)
	SOLUTION NMR (56)
	NEUTRON DIFFRACTION (1)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,973)
	RNA (71)
	DNA (20)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (206)
	1.5 - 2.0 (506)
	2.0 - 2.5 (557)
	2.5 - 3.0 (331)
	3.0 - 3.5 (186)
	3.5 - 4.0 (78)
	4.0 - 4.5 (32)
	> 4.5 (21)

Release Date

	1990 - 1994 (9)
	1995 - 1999 (21)
	2000 - 2004 (68)
	2005 - 2009 (197)
	2010 - 2014 (345)
	2015 - 2019 (553)
	2020 - 2024 (754)
	2025 - 2029 (26)

Enzyme Classification Name

	Transferases (1,106)
	Hydrolases (237)
	Translocases (48)
	Isomerases (89)
	Oxidoreductases (84)
	Ligases (26)
	Lyases (10)

Membrane Protein Annotation

	mpstruc (64)
	OPM (61)
	PDBTM (68)
	MemProtMD (18)

Symmetry Type

	Asymmetric (1,468)
	Cyclic (534)
	Dihedral (23)
	Helical (2)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (523)
	Alpha and beta proteins (a/b) (106)
	All alpha proteins (89)
	Artifacts (102)
	All beta proteins (42)
	Multi-domain proteins (alpha and beta) (11)
	Membrane and cell surface proteins and peptides (15)
	Peptides (9)
	Small proteins (4)
	Coiled coil proteins (3)

AllSelected

1 to 25 of 1,973 Structures

Page 1 of 79

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1A37 \| pdb_00001a37	Download File View File

14-3-3 PROTEIN ZETA BOUND TO PS-RAF259 PEPTIDE

Petosa, C., Masters, S.C., Pohl, J., Wang, B., Fu, H., Liddington, R.C.

(1998) J Biological Chem 273: 16305-16310

Released	1999-03-02
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Bos taurus
Macromolecule	14-3-3 PROTEIN ZETA (protein) PS-RAF259 PEPTIDE LSQRQRST(SEP)TPNVHM (protein)

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1APM \| pdb_00001apm	Download File View File

2.0 ANGSTROM REFINED CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH A PEPTIDE INHIBITOR AND DETERGENT

Knighton, D.R., Bell, S.M., Zheng, J., Teneyck, L.F., Xuong, N.-H., Taylor, S.S., Sowadski, J.M.

(1993) Acta Crystallogr D Biol Crystallogr 49: 357-361

Released	1993-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	PEPTIDE INHIBITOR PKI(5-24) (protein) cAMP-DEPENDENT PROTEIN KINASE (protein)
Unique Ligands	OCT

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1ATP \| pdb_00001atp	Download File View File

2.2 angstrom refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MNATP and a peptide inhibitor

Zheng, J., Trafny, E.A., Knighton, D.R., Xuong, N.-H., Taylor, S.S., Teneyck, L.F., Sowadski, J.M.

(1993) Acta Crystallogr D Biol Crystallogr 49: 362-365

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	PEPTIDE INHIBITOR PKI(5-24) (protein) cAMP-DEPENDENT PROTEIN KINASE (protein)
Unique Ligands	ATP, MN

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1B4G \| pdb_00001b4g	Download File View File

CONTROL OF K+ CHANNEL GATING BY PROTEIN PHOSPHORYLATION: STRUCTURAL SWITCHES OF THE INACTIVATION GATE, NMR, 22 STRUCTURES

Antz, C., Bauer, T., Kalbacher, H., Frank, R., Covarrubias, M., Kalbitzer, H.R., Ruppersberg, J.P., Baukrowitz, T., Fakler, B.

(1999) Nat Struct Biol 6: 146-150

Released	1999-04-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	POTASSIUM CHANNEL (protein)

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1B4I \| pdb_00001b4i	Download File View File

Control of K+ Channel Gating by protein phosphorylation: structural switches of the inactivation gate, NMR, 22 structures

Antz, C., Bauer, T., Kalbacher, H., Frank, R., Covarrubias, M., Kalbitzer, H.R., Ruppersberg, J.P., Baukrowitz, T., Fakler, B.

(1999) Nat Struct Biol 6: 146-150

Released	1999-04-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	POTASSIUM CHANNEL (protein)

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1BKX \| pdb_00001bkx	Download File View File

A BINARY COMPLEX OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE AND ADENOSINE FURTHER DEFINES CONFORMATIONAL FLEXIBILITY

Narayana, N., Cox, S., Xuong, N., Ten Eyck, L.F., Taylor, S.S.

(1997) Structure 5: 921-935

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	CAMP-DEPENDENT PROTEIN KINASE (protein)
Unique Ligands	AMP

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1BX6 \| pdb_00001bx6	Download File View File

CRYSTAL STRUCTURE OF THE POTENT NATURAL PRODUCT INHIBITOR BALANOL IN COMPLEX WITH THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE

Narayana, N., Xuong, N.-H., Ten Eyck, L.F., Taylor, S.S.

(1999) Biochemistry 38: 2367-2376

Released	1999-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	CAMP-DEPENDENT PROTEIN KINASE (protein)
Unique Ligands	BA1

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1C8L \| pdb_00001c8l	Download File View File

SYNERGISTIC INHIBITION OF GLYCOGEN PHOSPHORYLASE A BY A POTENTIAL ANTIDIABETIC DRUG AND CAFFEINE

Tsitsanou, K.E., Skamnaki, V.T., Oikonomakos, N.G.

(2000) Arch Biochem Biophys 384: 245-254

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (GLYCOGEN PHOSPHORYLASE) (protein)
Unique Ligands	BIN, CFF, GOL, PLP

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1CMK \| pdb_00001cmk	Download File View File

CRYSTAL STRUCTURES OF THE MYRISTYLATED CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE REVEAL OPEN AND CLOSED CONFORMATIONS

Zheng, J., Knighton, D.R., Xuong, N.-H., Taylor, S.S., Sowadski, J.M., Ten Eyck, L.F.

(1993) Protein Sci 2: 1559-1573

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	cAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT (protein) cAMP-dependent protein kinase inhibitor, alpha form (protein)
Unique Ligands	IOD, MYR

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1CNU \| pdb_00001cnu	Download File View File

PHOSPHORYLATED ACTOPHORIN FROM ACANTAMOEBA POLYPHAGA

Blanchoin, L., Robinson, R.C., Choe, S., Pollard, T.D.

(1998) J Biological Chem 273: 25106-25111

Released	1999-06-01
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Acanthamoeba polyphaga
Macromolecule	ACTOPHORIN (protein)

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1F34 \| pdb_00001f34	Download File View File

CRYSTAL STRUCTURE OF ASCARIS PEPSIN INHIBITOR-3 BOUND TO PORCINE PEPSIN

Ng, K.K., Petersen, J.F., Cherney, M.M., Garen, C., James, M.N.

(2000) Nat Struct Biol 7: 653-657

Released	2001-02-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Ascaris suum Sus scrofa
Macromolecule	MAJOR PEPSIN INHIBITOR PI-3 (protein) PEPSIN A (protein)
Unique Ligands	MPD

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1F8A \| pdb_00001f8a	Download File View File

STRUCTURAL BASIS FOR THE PHOSPHOSERINE-PROLINE RECOGNITION BY GROUP IV WW DOMAINS

Verdecia, M.A., Bowman, M.E., Lu, K.P., Hunter, T., Noel, J.P.

(2000) Nat Struct Biol 7: 639-643

Released	2000-08-23
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 (protein) Y(SEP)PT(SEP)S PEPTIDE (protein)

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1FA9 \| pdb_00001fa9	Download File View File

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH AMP

Rath, V.L., Ammirati, M., LeMotte, P.K., Fennell, K.F., Mansour, M.N., Danley, D.E., Hynes, T.R., Schulte, G.K., Wasilko, D.J., Pandit, J.

(2000) Mol Cell 6: 139-148

Released	2000-08-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GLYCOGEN PHOSPHORYLASE, LIVER FORM (protein)
Unique Ligands	AMP, GLC, PLP

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1FMO \| pdb_00001fmo	Download File View File

CRYSTAL STRUCTURE OF A POLYHISTIDINE-TAGGED RECOMBINANT CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH THE PEPTIDE INHIBITOR PKI(5-24) AND ADENOSINE

Narayana, N., Cox, S., Shaltiel, S., Taylor, S.S., Xuong, N.-H.

(1997) Biochemistry 36: 4438-4448

Released	1998-01-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus Oryctolagus cuniculus
Macromolecule	CAMP-DEPENDENT PROTEIN KINASE (protein) HEAT STABLE RABBIT SKELETAL MUSCLE INHIBITOR PROTEIN (protein)
Unique Ligands	ADN

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1FU0 \| pdb_00001fu0	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE PHOSPHO-SERINE 46 HPR FROM ENTEROCOCCUS FAECALIS

Audette, G.F., Engelmann, R., Hengstenberg, W., Deutscher, J., Hayakawa, K., Quail, J.W., Delbaere, L.T.J.

(2000) J Mol Biology 303: 545-553

Released	2000-11-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterococcus faecalis
Macromolecule	PHOSPHOCARRIER PROTEIN HPR (protein)

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1GKK \| pdb_00001gkk	Download File View File

Feruloyl esterase domain of XynY from clostridium thermocellum

Prates, J.A.M., Tarbouriech, N., Charnock, S.J., Fontes, C.M.G.A., Ferreira, L.M.A., Davies, G.J.

(2001) Structure 9: 1183

Released	2001-12-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDO-1,4-BETA-XYLANASE Y (protein)
Unique Ligands	CD, GOL

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1GPA \| pdb_00001gpa	Download File View File

STRUCTURAL MECHANISM FOR GLYCOGEN PHOSPHORYLASE CONTROL BY PHOSPHORYLATION AND AMP

Barford, D., Hu, S.-H., Johnson, L.N.

(1991) J Mol Biology 218: 233-260

Released	1992-10-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Oryctolagus cuniculus
Macromolecule	GLYCOGEN PHOSPHORYLASE A (protein)
Unique Ligands	PLP, SO4

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1GZ2 \| pdb_00001gz2	Download File View File

Crystal structure of the Ovocleidin-17 a major protein of the Gallus gallus eggshell calcified layer.

Reyes-Grajeda, J.P., Moreno, A., Romero, A.

(2002) Protein Pept Lett 9: 253

Released	2003-05-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	OVOCLEIDIN-17 (protein)

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1H1W \| pdb_00001h1w	Download File View File

High resolution crystal structure of the human PDK1 catalytic domain

Biondi, R.M., Komander, D., Thomas, C.C., Lizcano, J.M., Deak, M., Alessi, D.R., Van Aalten, D.M.F.

(2003) EMBO J 21: 4219

Released	2003-07-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1 (protein)
Unique Ligands	ATP, GOL, SO4

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1H4X \| pdb_00001h4x	Download File View File

Structure of the Bacillus Cell Fate Determinant SpoIIAA in the Phosphorylated Form

Seavers, P.R., Lewis, R.J., Brannigan, J.A., Verschueren, K.H.G., Murshudov, G.N., Wilkinson, A.J.

(2001) Structure 9: 605

Released	2001-07-06
Method	X-RAY DIFFRACTION 1.16 Å
Organisms	Lysinibacillus sphaericus
Macromolecule	ANTI-SIGMA F FACTOR ANTAGONIST (protein)
Unique Ligands	TRS

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1HJK \| pdb_00001hjk	Download File View File

ALKALINE PHOSPHATASE MUTANT H331Q

Murphy, J.E., Stec, B., Ma, L., Kantrowitz, E.R.

(1997) Nat Struct Biol 4: 618-622

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	ALKALINE PHOSPHATASE (protein)
Unique Ligands	MG, SO4, ZN

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1I7W \| pdb_00001i7w	Download File View File

BETA-CATENIN/PHOSPHORYLATED E-CADHERIN COMPLEX

Huber, A.H., Weis, W.I.

(2001) Cell 105: 391-402

Released	2001-05-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	BETA-CATENIN (protein) EPITHELIAL-CADHERIN (protein)
Unique Ligands	CL, ZN

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1J3H \| pdb_00001j3h	Download File View File

Crystal structure of apoenzyme cAMP-dependent protein kinase catalytic subunit

Akamine, P., Madhusudan, Wu, J., Xuong, N.H., Ten Eyck, L.F., Taylor, S.S.

(2003) J Mol Biology 327: 159-171

Released	2003-03-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus
Macromolecule	cAMP-dependent protein kinase, alpha-catalytic subunit (protein)
Unique Ligands	MPD

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1JBP \| pdb_00001jbp	Download File View File

Crystal Structure of the Catalytic Subunit of cAMP-dependent Protein Kinase Complexed with a Substrate Peptide, ADP and Detergent

Madhusudan, Trafny, E.A., Xuong, N.H., Adams, J.A., Ten Eyck, L.F., Taylor, S.S., Sowadski, J.M.

(1994) Protein Sci 3: 176-187

Released	2001-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus Oryctolagus cuniculus
Macromolecule	CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, MUSCLE/BRAIN FORM (protein) CAMP-DEPENDENT PROTEIN KINASE, ALPHA-CATALYTIC SUBUNIT (protein)
Unique Ligands	ADP, OCT