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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "BINDING PROTEIN"

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Search Summary

This query matches 16,627 Structures.

Refinements

Structure Determination Methodology

experimental (16,627)

Scientific Name of Source Organism

	Homo sapiens (5,588)
	synthetic construct (1,265)
	Mus musculus (608)
	Escherichia coli (604)
	Escherichia coli K-12 (417)
	Saccharomyces cerevisiae (298)
	Saccharomyces cerevisiae S288C (264)
	Rattus norvegicus (238)
	Streptomyces avidinii (234)
	Bos taurus (215)

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Taxonomy

	Eukaryota (9,703)
	Bacteria (5,883)
	other sequences (1,285)
	Archaea (653)
	Riboviria (279)
	Duplodnaviria (182)
	Eukaryota (eukaryotes) (110)
	Monodnaviria (82)
	unclassified sequences (74)
	Varidnaviria (38)

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Experimental Method

	X-RAY DIFFRACTION (13,306)
	SOLUTION NMR (1,734)
	ELECTRON MICROSCOPY (1,563)
	NEUTRON DIFFRACTION (16)
	SOLID-STATE NMR (12)
	ELECTRON CRYSTALLOGRAPHY (11)
	SOLUTION SCATTERING (6)
	EPR (1)

Polymer Entity Type

	Protein (16,623)
	DNA (2,140)
	RNA (1,155)
	NA-hybrid (32)

Refinement Resolution (Å)

	< 0.5 (1)
	0.5 - 1.0 (121)
	1.0 - 1.5 (1,770)
	1.5 - 2.0 (4,762)
	2.0 - 2.5 (3,707)
	2.5 - 3.0 (2,359)
	3.0 - 3.5 (1,288)
	3.5 - 4.0 (482)
	4.0 - 4.5 (175)
	> 4.5 (228)

Release Date

	1985 - 1989 (5)
	1990 - 1994 (112)
	1995 - 1999 (457)
	2000 - 2004 (984)
	2005 - 2009 (2,068)
	2010 - 2014 (2,850)
	2015 - 2019 (4,034)
	2020 - 2024 (5,763)
	2025 - 2029 (354)

Enzyme Classification Name

	Hydrolases (1,789)
	Transferases (1,058)
	Oxidoreductases (539)
	Lyases (412)
	Isomerases (259)
	Ligases (82)
	Translocases (13)

Membrane Protein Annotation

	OPM (135)
	PDBTM (61)
	MemProtMD (45)
	mpstruc (55)

Symmetry Type

	Asymmetric (10,688)
	Cyclic (4,922)
	Dihedral (1,091)
	Octahedral (309)
	Helical (125)
	Tetrahedral (98)
	Icosahedral (1)

SCOP Classification

	All beta proteins (2,455)
	All alpha proteins (2,047)
	Artifacts (1,626)
	Alpha and beta proteins (a+b) (1,219)
	Alpha and beta proteins (a/b) (902)
	Small proteins (252)
	Coiled coil proteins (64)
	Multi-domain proteins (alpha and beta) (57)
	Peptides (29)
	Low resolution protein structures (8)

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AllSelected

1 to 25 of 16,627 Structures

Page 1 of 666

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1A99 \| pdb_00001a99	Download File View File

PUTRESCINE RECEPTOR (POTF) FROM E. COLI

Vassylyev, D.G., Tomitori, H., Kashiwagi, K., Morikawa, K., Igarashi, K.

(1998) J Biological Chem 273: 17604-17609

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PUTRESCINE-BINDING PROTEIN (protein)
Unique Ligands	PUT

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1ABE \| pdb_00001abe	Download File View File

NOVEL STEREOSPECIFICITY OF THE L-ARABINOSE-BINDING PROTEIN

Vyas, N.K., Quiocho, F.A.

(1984) Nature 310: 381-386

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	L-ARABINOSE-BINDING PROTEIN (protein)
Unique Ligands	ARA, ARB

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1ABF \| pdb_00001abf	Download File View File

SUBSTRATE SPECIFICITY AND AFFINITY OF A PROTEIN MODULATED BY BOUND WATER MOLECULES

Wilson, D.K., Quiocho, F.A.

(1989) Nature 340: 404-407

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	L-ARABINOSE-BINDING PROTEIN (protein)
Unique Ligands	FCA, FCB

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1AMF \| pdb_00001amf	Download File View File

CRYSTAL STRUCTURE OF MODA, A MOLYBDATE TRANSPORT PROTEIN, COMPLEXED WITH MOLYBDATE

Hu, Y., Rech, S., Gunsalus, R.P., Rees, D.C.

(1997) Nat Struct Biol 4: 703-707

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDATE TRANSPORT PROTEIN MODA (protein)
Unique Ligands	MOO

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1ATG \| pdb_00001atg	Download File View File

AZOTOBACTER VINELANDII PERIPLASMIC MOLYBDATE-BINDING PROTEIN

Lawson, D.M., Pau, R.N., Williams, C.E.M., Mitchenall, L.A.

(1998) Structure 6: 1529-1539

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Azotobacter vinelandii
Macromolecule	PERIPLASMIC MOLYBDATE-BINDING PROTEIN (protein)
Unique Ligands	ACT, EDO, SO4, WO4

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1AXJ \| pdb_00001axj	Download File View File

FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F), NMR, 20 STRUCTURES

Liepinsh, E., Otting, G.

(1997) Nat Struct Biol 4: 975-979

Released	1998-01-14
Method	SOLUTION NMR
Organisms	Nitratidesulfovibrio vulgaris str. 'Miyazaki F
Macromolecule	FMN-BINDING PROTEIN (protein)
Unique Ligands	FMN

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1BZD \| pdb_00001bzd	Download File View File

TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION

Schormann, N., Murrell, J.R., Benson, M.D.

(1998) Amyloid 5: 175-187

Released	1998-11-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TRANSTHYRETIN) (protein)

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1BZE \| pdb_00001bze	Download File View File

TERTIARY STRUCTURES OF THREE AMYLOIDOGENIC TRANSTHYRETIN VARIANTS AND IMPLICATIONS FOR AMYLOID FIBRIL FORMATION

Schormann, N., Murrell, J.R., Benson, M.D.

(1998) Amyloid 5: 175-187

Released	1998-11-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TRANSTHYRETIN) (protein)

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1CTO \| pdb_00001cto	Download File View File

NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LIGAND-BINDING REGION OF MURINE GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR, MINIMIZED AVERAGE STRUCTURE

Yamasaki, K., Naito, S., Anaguchi, H., Ohkubo, T., Ota, Y.

(1997) Nat Struct Biol 4: 498-504

Released	1997-10-22
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR (protein)

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1D5Q \| pdb_00001d5q	Download File View File

SOLUTION STRUCTURE OF A MINI-PROTEIN REPRODUCING THE CORE OF THE CD4 SURFACE INTERACTING WITH THE HIV-1 ENVELOPE GLYCOPROTEIN

Vita, C., Drakopoulou, E., Vizzanova, J., Rochette, S., Martin, L., Menez, A., Roumestand, C., Yang, Y.S., Ylisastigui, L., Benjouad, A., Gluckman, J.C.

(1999) Proc Natl Acad Sci U S A 96: 13091-13096

Released	2000-10-11
Method	SOLUTION NMR
Macromolecule	CHIMERIC MINI-PROTEIN (protein)

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1DBP \| pdb_00001dbp	Download File View File

IDENTICAL MUTATIONS AT CORRESPONDING POSITIONS IN TWO HOMOLOGOUS PROTEINS WITH NON-IDENTICAL EFFECTS

Mowbray, S.L., Joakim Bjorkman, A.J.

(1994) J Biological Chem 269: 11196-11200

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	D-RIBOSE-BINDING PROTEIN (protein)
Unique Ligands	RIP

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1DF8 \| pdb_00001df8	Download File View File

S45A MUTANT OF STREPTAVIDIN IN COMPLEX WITH BIOTIN

Hyre, D.E., Le Trong, I., Freitag, S., Stenkamp, R.E., Stayton, P.S.

(2000) Protein Sci 9: 878-885

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Streptomyces avidinii
Macromolecule	PROTEIN (STREPTAVIDIN) (protein)
Unique Ligands	BTN

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1DRK \| pdb_00001drk	Download File View File

PROBING PROTEIN-PROTEIN INTERACTIONS: THE RIBOSE-BINDING PROTEIN IN BACTERIAL TRANSPORT AND CHEMOTAXIS

Mowbray, S.L., Bjorkman, A.J.

(1994) J Biological Chem 269: 30206-30211

Released	1995-01-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	D-RIBOSE-BINDING PROTEIN (protein)
Unique Ligands	RIP

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1GCF \| pdb_00001gcf	Download File View File

NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LIGAND-BINDING REGION OF MURINE GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR, 12 STRUCTURES

Yamasaki, K., Naito, S., Anaguchi, H., Ohkubo, T., Ota, Y.

(1997) Nat Struct Biol 4: 498-504

Released	1997-10-22
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR (protein)

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1GGG \| pdb_00001ggg	Download File View File

GLUTAMINE BINDING PROTEIN OPEN LIGAND-FREE STRUCTURE

Hsiao, C.-D., Sun, Y.-J., Rose, J., Wang, B.-C.

(1996) J Mol Biology 262: 225-242

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE BINDING PROTEIN (protein)

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1H9J \| pdb_00001h9j	Download File View File

Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity. Phosphate-grown form with molybdate and phosphate bound

Delarbre, L., Stevenson, C.E.M., White, D.J., Mitchenall, L.A., Pau, R.N., Lawson, D.M.

(2001) J Mol Biology 308: 1063

Released	2001-05-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Azotobacter vinelandii
Macromolecule	MOLYBDENUM-BINDING-PROTEIN (protein)
Unique Ligands	MOO, PO4

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1H9K \| pdb_00001h9k	Download File View File

Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity. Phosphate-grown form with tungstate and phosphate bound

Delarbre, L., Stevenson, C.E.M., White, D.J., Mitchenall, L.A., Pau, R.N., Lawson, D.M.

(2001) J Mol Biology 308: 1063

Released	2001-05-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Azotobacter vinelandii
Macromolecule	MOLYBDENUM-BINDING-PROTEIN (protein)
Unique Ligands	PO4, WO4