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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "PROTEIN TRANSPORT"

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Search Summary

This query matches 1,719 Structures.

Refinements

Structure Determination Methodology

experimental (1,719)

Scientific Name of Source Organism

	Homo sapiens (670)
	Saccharomyces cerevisiae (185)
	Mus musculus (179)
	Saccharomyces cerevisiae S288C (90)
	Escherichia coli (83)
	Rattus norvegicus (59)
	Escherichia coli K-12 (51)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (36)
	Bos taurus (32)
	synthetic construct (31)

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Taxonomy

	Eukaryota (1,200)
	Bacteria (548)
	Riboviria (38)
	other sequences (32)
	Eukaryota (eukaryotes) (31)
	Archaea (15)
	Duplodnaviria (8)
	Monodnaviria (5)
	Riboviria (RNA viruses and viroids) (5)
	Varidnaviria (3)

More...

Experimental Method

	X-RAY DIFFRACTION (1,284)
	ELECTRON MICROSCOPY (320)
	SOLUTION NMR (113)
	SOLID-STATE NMR (2)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (1,719)
	RNA (12)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (73)
	1.5 - 2.0 (319)
	2.0 - 2.5 (390)
	2.5 - 3.0 (325)
	3.0 - 3.5 (243)
	3.5 - 4.0 (119)
	4.0 - 4.5 (52)
	> 4.5 (82)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (104)
	2005 - 2009 (345)
	2010 - 2014 (479)
	2015 - 2019 (353)
	2020 - 2024 (396)
	2025 - 2029 (34)

Enzyme Classification Name

	Hydrolases (278)
	Translocases (69)
	Transferases (40)
	Oxidoreductases (12)
	Isomerases (7)
	Ligases (4)
	Lyases (1)

Membrane Protein Annotation

	mpstruc (203)
	PDBTM (236)
	OPM (179)
	MemProtMD (180)

Symmetry Type

	Asymmetric (1,323)
	Cyclic (439)
	Dihedral (43)
	Helical (12)
	Octahedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (235)
	All alpha proteins (159)
	Alpha and beta proteins (a+b) (154)
	All beta proteins (174)
	Artifacts (127)
	Membrane and cell surface proteins and peptides (16)
	Small proteins (14)
	Coiled coil proteins (8)

AllSelected

1 to 25 of 1,719 Structures

Page 1 of 69

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2N01 \| pdb_00002n01	Download File View File

NMR structure of VirB9 C-terminal domain in complex with VirB7 N-terminal domain from Xanthomonas citri's T4SS

Oliveira, L.C., Souza, D.P., Salinas, R.K., Wienk, H., Boelens, R., Farah, S.C.

(2016) Structure 24: 1707-1718

Released	2015-09-09
Method	SOLUTION NMR
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	VirB7 protein (protein) VirB9 protein (protein)

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2OFQ \| pdb_00002ofq	Download File View File

NMR Solution Structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system

Harris, R., Bayliss, R., Driscoll, P.C., Waksman, G.

(2007) Proc Natl Acad Sci U S A 104: 1673-1678

Released	2007-01-23
Method	SOLUTION NMR
Organisms	IncN plasmid R46
Macromolecule	TraN (protein) TraO (protein)

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1BK5 \| pdb_00001bk5	Download File View File

KARYOPHERIN ALPHA FROM SACCHAROMYCES CEREVISIAE

Conti, E., Uy, M., Leighton, L., Blobel, G., Kuriyan, J.

(1998) Cell 94: 193-204

Released	1999-01-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	KARYOPHERIN ALPHA (protein)
Unique Ligands	CO

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1E5A \| pdb_00001e5a	Download File View File

Structure of human transthyretin complexed with bromophenols: a new mode of binding

Ghosh, M., Meerts, I.A.T.M., Cook, A., Bergman, A., Brouwer, A., Johnson, L.N.

(2000) Acta Crystallogr D Biol Crystallogr 56: 1085

Released	2000-08-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	TRANSTHYRETIN (protein)
Unique Ligands	TBP

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1EQ6 \| pdb_00001eq6	Download File View File

1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE RAN-BINDING PROTEIN MOG1P

Stewart, M., Baker, R.P.

(2000) J Mol Biology 299: 213-223

Released	2000-05-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MOG1P (protein)

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1F6B \| pdb_00001f6b	Download File View File

CRYSTAL STRUCTURE OF SAR1-GDP COMPLEX

Huang, M., Wilson, I.A., Balch, W.E.

(2001) J Cell Biol 155: 937-948

Released	2002-01-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Cricetulus griseus
Macromolecule	SAR1 (protein)
Unique Ligands	GDP, MG, SO4

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1HUQ \| pdb_00001huq	Download File View File

1.8A CRYSTAL STRUCTURE OF THE MONOMERIC GTPASE RAB5C (MOUSE)

Merithew, E., Hatherly, S., Dumas, J.J., Lawe, D.C., Heller-Harrison, R., Lambright, D.G.

(2001) J Biological Chem 276: 13982-13988

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	RAB5C (protein)
Unique Ligands	GNP, MG

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1HUR \| pdb_00001hur	Download File View File

HUMAN ADP-RIBOSYLATION FACTOR 1 COMPLEXED WITH GDP, FULL LENGTH NON-MYRISTOYLATED

Amor, J.C., Harrison, D.H., Kahn, R.A., Ringe, D.

(1994) Nature 372: 704-708

Released	1995-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	HUMAN ADP-RIBOSYLATION FACTOR 1 (protein)
Unique Ligands	GDP, MG

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1IFQ \| pdb_00001ifq	Download File View File

Sec22b N-terminal domain

Gonzalez Jr., L.C., Weis, W.I., Scheller, R.H.

(2001) J Biological Chem 276: 24203-24211

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	vesicle trafficking protein Sec22b (protein)
Unique Ligands	GOL

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1IHR \| pdb_00001ihr	Download File View File

Crystal structure of the dimeric C-terminal domain of TonB

Chang, C., Mooser, A., Pluckthun, A., Wlodawer, A.

(2001) J Biological Chem 276: 27535-27540

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli
Macromolecule	TonB protein (protein)
Unique Ligands	BR

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1IQ1 \| pdb_00001iq1	Download File View File

CRYSTAL STRUCTURE OF THE IMPORTIN-ALPHA(44-54)-IMPORTIN-ALPHA(70-529) COMPLEX

Catimel, B., Teh, T., Fontes, M.R.M., Jennings, I.G., Kobe, B.

(2001) J Biological Chem 276: 34189-34198

Released	2001-11-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	IMPORTIN ALPHA-2 SUBUNIT (protein)

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1IWL \| pdb_00001iwl	Download File View File

Crystal Structure of the Lipoprotein Localization Factor, LolA

Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.

(2003) EMBO J 22: 3199-3209

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	Outer-membrane lipoproteins carrier protein (protein)
Unique Ligands	MG, ZN

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1IWM \| pdb_00001iwm	Download File View File

Crystal Structure of the Outer Membrane Lipoprotein Receptor, LolB

Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.

(2003) EMBO J 22: 3199-3209

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Outer Membrane Lipoprotein LolB (protein)
Unique Ligands	SO4

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1IWN \| pdb_00001iwn	Download File View File

Crystal Structure of the Outer Membrane Lipoprotein Receptor LolB Complexed with PEGMME2000

Takeda, K., Miyatake, H., Yokota, N., Matsuyama, S., Tokuda, H., Miki, K.

(2003) EMBO J 22: 3199-3209

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Outer Membrane Lipoprotein LolB (protein)
Unique Ligands	PG5, SO4

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1J2J \| pdb_00001j2j	Download File View File

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form

Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

(2003) Nat Struct Biol 10: 386-393

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 1 (protein) ADP-ribosylation factor binding protein GGA1 (protein)
Unique Ligands	GTP, IOD, MG

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1JB2 \| pdb_00001jb2	Download File View File

CRYSTAL STRUCTURE OF NTF2 M84E MUTANT

Chaillan-Huntington, C., Butler, P.J., Huntington, J.A., Akin, D., Feldherr, C., Stewart, M.

(2001) J Mol Biology 314: 465-477

Released	2002-03-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1JB4 \| pdb_00001jb4	Download File View File

CRYSTAL STRUCTURE OF NTF2 M102E MUTANT

Chaillan-Huntington, C., Butler, P.J., Huntington, J.A., Akin, D., Feldherr, C., Stewart, M.

(2001) J Mol Biology 314: 465-477

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1JB5 \| pdb_00001jb5	Download File View File

CRYSTAL STRUCTURE OF NTF2 M118E MUTANT

Chaillan-Huntington, C., Butler, P.J., Huntington, J.A., Akin, D., Feldherr, C., Stewart, M.

(2001) J Mol Biology 314: 465-477

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	NUCLEAR TRANSPORT FACTOR 2 (protein)

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1JJ7 \| pdb_00001jj7	Download File View File

Crystal Structure of the C-terminal ATPase domain of human TAP1

Gaudet, R., Wiley, D.C.

(2001) EMBO J 20: 4964-4972

Released	2001-09-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PEPTIDE TRANSPORTER TAP1 (protein)
Unique Ligands	ADP, MG

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1JWF \| pdb_00001jwf	Download File View File

Crystal Structure of human GGA1 VHS domain.

Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.

(2002) Nature 415: 937-941

Released	2002-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor binding protein GGA1 (protein)

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1LR0 \| pdb_00001lr0	Download File View File

Pseudomonas aeruginosa TolA Domain III, Seleno-methionine Derivative

Witty, M., Sanz, C., Shah, A., Grossman, J.G., Mizuguchi, K., Perham, R.N., Luisi, B.

(2002) EMBO J 21: 4207-4218

Released	2002-05-29
Method	X-RAY DIFFRACTION 1.914 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	TolA protein (protein)
Unique Ligands	TRS, ZN

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1LS1 \| pdb_00001ls1	Download File View File

T. aquaticus Ffh NG Domain at 1.1A Resolution

Ramirez, U.D., Minasov, G., Freymann, D.M.

(2002) J Mol Biology 320: 783-799

Released	2002-11-16
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Thermus aquaticus
Macromolecule	SIGNAL RECOGNITION PARTICLE PROTEIN (protein)
Unique Ligands	MG, OXY

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1M2V \| pdb_00001m2v	Download File View File

Crystal Structure of the yeast Sec23/24 heterodimer

Bi, X., Corpina, R.A., Goldberg, J.

(2002) Nature 419: 271-277

Released	2002-09-20
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	protein transport protein SEC23 (protein) protein transport protein SEC24 (protein)
Unique Ligands	ZN

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1M5N \| pdb_00001m5n	Download File View File

Crystal structure of HEAT repeats (1-11) of importin b bound to the non-classical NLS(67-94) of PTHrP

Cingolani, G., Bednenko, J., Gillespie, M.T., Gerace, L.

(2002) Mol Cell 10: 1345-1353

Released	2003-01-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Importin beta-1 subunit (protein) Parathyroid hormone-related protein (protein)