RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "RNA BINDING PROTEIN"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 2,765 Structures.

Refinements

Structure Determination Methodology

experimental (2,765)

Scientific Name of Source Organism

	Homo sapiens (1,126)
	synthetic construct (273)
	Mus musculus (124)
	Saccharomyces cerevisiae (103)
	Drosophila melanogaster (80)
	Saccharomyces cerevisiae S288C (80)
	Caenorhabditis elegans (62)
	Escherichia coli (56)
	Escherichia coli K-12 (53)
	Arabidopsis thaliana (35)

More...

Taxonomy

	Eukaryota (1,841)
	Bacteria (629)
	other sequences (273)
	Riboviria (171)
	Archaea (157)
	Duplodnaviria (31)
	unclassified sequences (26)
	Eukaryota (eukaryotes) (4)
	Riboviria (RNA viruses and viroids) (3)
	unclassified bacterial viruses (3)

More...

Experimental Method

	X-RAY DIFFRACTION (1,839)
	ELECTRON MICROSCOPY (494)
	SOLUTION NMR (426)
	ELECTRON CRYSTALLOGRAPHY (6)
	SOLUTION SCATTERING (3)

Polymer Entity Type

	Protein (2,765)
	RNA (1,031)
	DNA (178)
	NA-hybrid (20)

Refinement Resolution (Å)

	0.5 - 1.0 (9)
	1.0 - 1.5 (183)
	1.5 - 2.0 (579)
	2.0 - 2.5 (491)
	2.5 - 3.0 (472)
	3.0 - 3.5 (390)
	3.5 - 4.0 (151)
	4.0 - 4.5 (34)
	> 4.5 (30)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (19)
	2000 - 2004 (136)
	2005 - 2009 (349)
	2010 - 2014 (479)
	2015 - 2019 (612)
	2020 - 2024 (1,090)
	2025 - 2029 (79)

Enzyme Classification Name

	Hydrolases (489)
	Transferases (241)
	Oxidoreductases (23)
	Isomerases (34)
	Ligases (34)
	Lyases (32)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (2,224)
	Cyclic (533)
	Dihedral (73)
	Helical (9)
	Tetrahedral (3)
	Octahedral (2)

SCOP Classification

	All beta proteins (209)
	Alpha and beta proteins (a+b) (394)
	Artifacts (299)
	Alpha and beta proteins (a/b) (117)
	All alpha proteins (108)
	Small proteins (18)
	Multi-domain proteins (alpha and beta) (9)
	Peptides (5)
	Low resolution protein structures (5)
	Coiled coil proteins (2)

More...

AllSelected

1 to 25 of 2,765 Structures

Page 1 of 111

Sort by

Explore in 3D

1AIL \| pdb_00001ail	Download File View File

N-TERMINAL FRAGMENT OF NS1 PROTEIN FROM INFLUENZA A VIRUS

Liu, J., Lynch, P.A., Chien, C., Montelione, G.T., Krug, R.M., Berman, H.M.

(1997) Nat Struct Biol 4: 896-899

Released	1997-10-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/Udorn/307/1972(H3N2))
Macromolecule	NONSTRUCTURAL PROTEIN NS1 (protein)

Explore in 3D

1B34 \| pdb_00001b34	Download File View File

CRYSTAL STRUCTURE OF THE D1D2 SUB-COMPLEX FROM THE HUMAN SNRNP CORE DOMAIN

Walke, S., Young, R.J., Kambach, C., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

(1999) Cell 96: 375-387

Released	2000-01-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1) (protein) PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2) (protein)

Explore in 3D

1B75 \| pdb_00001b75	Download File View File

SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L25 FROM ESCHERICHIA COLI

Stoldt, M., Woehnert, J., Goerlach, M., Brown, L.R.

(1998) EMBO J 17: 6377-6384

Released	2000-01-26
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PROTEIN (50S RIBOSOMAL PROTEIN L25) (protein)

Explore in 3D

1BXE \| pdb_00001bxe	Download File View File

RIBOSOMAL PROTEIN L22 FROM THERMUS THERMOPHILUS

Unge, J., Aberg, A., Al-Karadaghi, S., Nikulin, A., Nikonov, S., Davydova, N., Nevskaya, N., Garber, M., Liljas, A.

(1998) Structure 6: 1577-1586

Released	1998-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus
Macromolecule	PROTEIN (RIBOSOMAL PROTEIN L22) (protein)
Unique Ligands	CL

Explore in 3D

1BY0 \| pdb_00001by0	Download File View File

N-TERMINAL LEUCINE-REPEAT REGION OF HEPATITIS DELTA ANTIGEN

Cheng, J.W., Lin, I.J., Lou, Y.C.

(1999) Proteins 37: 121-129

Released	1999-12-29
Method	SOLUTION NMR
Organisms	Hepatitis delta virus genotype I (isolate American)
Macromolecule	PROTEIN (HEPATITIS DELTA ANTIGEN) (protein)

Explore in 3D

1D2E \| pdb_00001d2e	Download File View File

CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP

Andersen, G.R., Thirup, S., Spremulli, L.L., Nyborg, J.

(2000) J Mol Biology 297: 421-436

Released	1999-09-28
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Bos taurus
Macromolecule	ELONGATION FACTOR TU (EF-TU) (protein)
Unique Ligands	GDP, MG

Explore in 3D

1D3B \| pdb_00001d3b	Download File View File

CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION

Kambach, C., Walke, S., Avis, J.M., De La Fortelle, E., Li, J., Nagai, K.

(1999) Cell 96: 375-387

Released	1999-12-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) (protein) PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) (protein)
Unique Ligands	CIT, GOL

Explore in 3D

1D8Z \| pdb_00001d8z	Download File View File

SOLUTION STRUCTURE OF THE FIRST RNA-BINDING DOMAIN (RBD1) OF HU ANTIGEN C (HUC)

Inoue, M., Muto, Y., Sakamoto, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) Nucleic Acids Res 28: 1743-1750

Released	2000-04-07
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	HU ANTIGEN C (protein)

Explore in 3D

1D9A \| pdb_00001d9a	Download File View File

SOLUTION STRUCTURE OF THE SECOND RNA-BINDING DOMAIN (RBD2) OF HU ANTIGEN C (HUC)

Inoue, M., Muto, Y., Sakamoto, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) Nucleic Acids Res 28: 1743-1750

Released	2000-04-07
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	HU ANTIGEN C (protein)

Explore in 3D

1DG1 \| pdb_00001dg1	Download File View File

WHOLE, UNMODIFIED, EF-TU(ELONGATION FACTOR TU).

Abel, K., Yoder, M., Hilgenfeld, R., Jurnak, F.

(1996) Structure 4: 1153-1159

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	ELONGATION FACTOR TU (protein)
Unique Ligands	GDP, MG

Explore in 3D

1DVK \| pdb_00001dvk	Download File View File

CRYSTAL STRUCTURE OF THE FUNCTIONAL DOMAIN OF THE SPLICING FACTOR PRP18

Jiang, J., Horowitz, D.S., Xu, R.M.

(2000) Proc Natl Acad Sci U S A 97: 3022-3027

Released	2000-04-05
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PRP18 (protein)

Explore in 3D

1E7K \| pdb_00001e7k	Download File View File

Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

Vidovic, I., Nottrott, S., Harthmuth, K., Luhrmann, R., Ficner, R.

(2000) Mol Cell 6: 1331

Released	2001-02-19
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	15.5 KD RNA BINDING PROTEIN (protein) RNA (5'-R(GPCPCPAPAPUPGPAPGPGPUPUPUP APUPCPCPGPAPGPGC(-3') (nucleic acid)

Explore in 3D

1EFC \| pdb_00001efc	Download File View File

INTACT ELONGATION FACTOR FROM E.COLI

Song, H., Parsons, M.R., Rowsell, S., Leonard, G., Phillips, S.E.V.

(1999) J Mol Biology 285: 1245-1256

Released	1999-03-18
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ELONGATION FACTOR) (protein)
Unique Ligands	GDP, MG

Explore in 3D

1FL0 \| pdb_00001fl0	Download File View File

CRYSTAL STRUCTURE OF THE EMAP2/RNA-BINDING DOMAIN OF THE P43 PROTEIN FROM HUMAN AMINOACYL-TRNA SYNTHETASE COMPLEX

Renault, L., Kerjan, P., Pasqualato, S., Menetrey, J., Robinson, J.-C., Kawaguchi, S., Vassylyev, D.G., Yokoyama, S., Mirande, M., Cherfils, J.

(2001) EMBO J 20: 570-578

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II (protein)

Explore in 3D

1FO1 \| pdb_00001fo1	Download File View File

CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE MRNA EXPORT FACTOR TAP

Liker, E., Fernandez, E., Izaurralde, E., Conti, E.

(2000) EMBO J 19: 5587-5598

Released	2000-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	NUCLEAR RNA EXPORT FACTOR 1 (protein)

Explore in 3D

1FT8 \| pdb_00001ft8	Download File View File

CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE MRNA EXPORT FACTOR TAP

Liker, E., Fernandez, E., Izaurralde, E., Conti, E.

(2000) EMBO J 19: 5587-5598

Released	2000-12-11
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	TIP ASSOCIATING PROTEIN (protein)

Explore in 3D

1G8A \| pdb_00001g8a	Download File View File

PYROCOCCUS HORIKOSHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN

Boisvert, D.C., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

To be published

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pyrococcus horikoshii
Macromolecule	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN (protein)

Explore in 3D

1G8S \| pdb_00001g8s	Download File View File

METHANOCOCCUS JANNASCHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN

Boisvert, D.C., Kim, S.H.

To be published

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN (protein)
Unique Ligands	MET

Explore in 3D

1G9L \| pdb_00001g9l	Download File View File

SOLUTION STRUCTURE OF THE PABC DOMAIN OF HUMAN POLY(A) BINDING PROTEIN

Kozlov, G., Trempe, J.-F., Khaleghpour, K., Kahvejian, A., Ekiel, I., Gehring, K.

(2001) Proc Natl Acad Sci U S A 98: 4409-4413

Released	2001-03-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	POLYADENYLATE-BINDING PROTEIN 1 (protein)

Explore in 3D

1GD7 \| pdb_00001gd7	Download File View File

CRYSTAL STRUCTURE OF A BIFUNCTIONAL PROTEIN (CSAA) WITH EXPORT-RELATED CHAPERONE AND TRNA-BINDING ACTIVITIES.

Shibata, T., Inoue, Y., Vassylyev, D.G., Kawaguchi, S., Yokoyama, S., Muller, J., Linde, D., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2001) EMBO J 20: 562-569

Released	2001-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	CSAA PROTEIN (protein)

Explore in 3D

1HD0 \| pdb_00001hd0	Download File View File

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR

Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.

(1999) J Mol Biology 287: 221-237

Released	2000-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) (protein)

Explore in 3D

1HD1 \| pdb_00001hd1	Download File View File

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR

Nagata, T., Kurihara, Y., Matsuda, G., Saeki, J., Kohno, T., Yanagida, Y., Ishikawa, F., Uesugi, S., Katahira, M.

(1999) J Mol Biology 287: 221-237

Released	2000-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) (protein)

Explore in 3D

1HK9 \| pdb_00001hk9	Download File View File

Crystal structure of the Hfq protein from Escherichia coli

Sauter, C., Basquin, J., Suck, D.

(2003) Nucleic Acids Res 31: 4091

Released	2003-07-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN HFQ (protein)

Explore in 3D

1HV8 \| pdb_00001hv8	Download File View File

CRYSTAL STRUCTURE OF A DEAD BOX PROTEIN FROM THE HYPERTHERMOPHILE METHANOCOCCUS JANNASCHII

Story, R.M., Li, H., Abelson, J.N.

(2001) Proc Natl Acad Sci U S A 98: 1465-1470

Released	2001-02-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669 (protein)
Unique Ligands	SO4