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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSCRIPTION REGULATION"

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Search Summary

This query matches 127 Structures.

Refinements

Structure Determination Methodology

experimental (127)

Scientific Name of Source Organism

	Escherichia coli (28)
	Homo sapiens (27)
	Saccharomyces cerevisiae (12)
	Bacillus subtilis (8)
	Escherichia coli K-12 (7)
	Mus musculus (7)
	Desulfitobacterium hafniense DCB-2 (6)
	Lederbergvirus P22 (5)
	Drosophila melanogaster (4)
	Arabidopsis thaliana (2)

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Taxonomy

	Bacteria (60)
	Eukaryota (54)
	Duplodnaviria (6)
	Riboviria (5)
	Monodnaviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (78)
	SOLUTION NMR (49)

Polymer Entity Type

	Protein (127)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (21)
	2.0 - 2.5 (31)
	2.5 - 3.0 (19)
	3.0 - 3.5 (5)

Release Date

	1990 - 1994 (19)
	1995 - 1999 (64)
	2000 - 2004 (11)
	2005 - 2009 (25)
	2010 - 2014 (8)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (3)
	Ligases (2)

Symmetry Type

	Asymmetric (75)
	Cyclic (53)
	Tetrahedral (1)

SCOP Classification

	All alpha proteins (64)
	All beta proteins (22)
	Artifacts (15)
	Alpha and beta proteins (a/b) (8)
	Small proteins (16)
	Alpha and beta proteins (a+b) (10)
	Coiled coil proteins (3)
	Peptides (5)

AllSelected

1 to 25 of 127 Structures

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1A3C \| pdb_00001a3c	Download File View File

PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, DIMERIC FORM

Tomchick, D.R., Turner, R.J., Switzer, R.W., Smith, J.L.

(1998) Structure 6: 337-350

Released	1998-08-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	PYRIMIDINE OPERON REGULATORY PROTEIN PYRR (protein)
Unique Ligands	SM, SO4

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1A4X \| pdb_00001a4x	Download File View File

PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, HEXAMERIC FORM

Tomchick, D.R., Turner, R.J., Switzer, R.W., Smith, J.L.

(1998) Structure 6: 337-350

Released	1998-08-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	PYRIMIDINE OPERON REGULATORY PROTEIN PYRR (protein)
Unique Ligands	SO4

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1A6I \| pdb_00001a6i	Download File View File

TET REPRESSOR, CLASS D VARIANT

Orth, P., Cordes, F., Schnappinger, D., Hillen, W., Saenger, W., Hinrichs, W.

(1998) J Mol Biology 279: 439-447

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR PROTEIN CLASS D (protein)

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1A7G \| pdb_00001a7g	Download File View File

THE CRYSTAL STRUCTURE OF THE E2 DNA-BINDING DOMAIN FROM HUMAN PAPILLOMAVIRUS AT 2.4 ANGSTROMS

Bussiere, D.E., Giranda, V.L.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1367-1376

Released	1999-04-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	human papillomavirus 31
Macromolecule	REGULATORY PROTEIN E2 (protein)
Unique Ligands	SO4

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1AD6 \| pdb_00001ad6	Download File View File

DOMAIN A OF HUMAN RETINOBLASTOMA TUMOR SUPPRESSOR

Kim, H.Y., Cho, Y.

(1997) Nat Struct Biol 4: 390-395

Released	1998-08-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	RETINOBLASTOMA TUMOR SUPPRESSOR (protein)

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1ADN \| pdb_00001adn	Download File View File

SOLUTION STRUCTURE OF THE DNA METHYLPHOSPHOTRIESTER REPAIR DOMAIN OF ESCHERICHIA COLI ADA

Myers, L.C., Verdine, G.L., Wagner, G.

(1993) Biochemistry 32: 14089-14094

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	N-ADA 10 (protein)
Unique Ligands	ZN

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1ADR \| pdb_00001adr	Download File View File

DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE DNA-BINDING DOMAIN OF THE P22 C2 REPRESSOR (1-76) IN SOLUTION AND COMPARISON WITH THE DNA-BINDING DOMAIN OF THE 434 REPRESSOR

Sevillasierra, P., Otting, G., Wuthrich, K.

(1994) J Mol Biology 235: 1003-1020

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	P22 C2 REPRESSOR (protein)

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1AJY \| pdb_00001ajy	Download File View File

STRUCTURE AND MOBILITY OF THE PUT3 DIMER: A DNA PINCER, NMR, 13 STRUCTURES

Walters, K.J., Dayie, K.T., Reece, R.J., Ptashne, M., Wagner, G.

(1997) Nat Struct Biol 4: 744-750

Released	1997-09-17
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	PUT3 (protein)
Unique Ligands	ZN

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1AL3 \| pdb_00001al3	Download File View File

COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES

Verschueren, K.H.G., Tyrrell, R., Wilkinson, A.J.

(1997) Structure 5: 1017-1032

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella aerogenes
Macromolecule	CYS REGULON TRANSCRIPTIONAL ACTIVATOR CYSB (protein)
Unique Ligands	SO4

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1ARD \| pdb_00001ard	Download File View File

STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING

Hoffman, R.C., Xu, R.X., Horvath, S.J., Herriott, J.R., Klevit, R.E.

(1993) Protein Sci 2: 951-965

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	YEAST TRANSCRIPTION FACTOR ADR1 (protein)
Unique Ligands	ZN

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1ARE \| pdb_00001are	Download File View File

STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING

Hoffman, R.C., Xu, R.X., Horvath, S.J., Herriott, J.R., Klevit, R.E.

(1993) Protein Sci 2: 951-965

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	YEAST TRANSCRIPTION FACTOR ADR1 (protein)
Unique Ligands	ZN

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1ARF \| pdb_00001arf	Download File View File

STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING

Hoffman, R.C., Xu, R.X., Horvath, S.J., Herriott, J.R., Klevit, R.E.

(1993) Protein Sci 2: 951-965

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	YEAST TRANSCRIPTION FACTOR ADR1 (protein)
Unique Ligands	ZN

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1AUU \| pdb_00001auu	Download File View File

SOLUTION STRUCTURE OF THE RNA-BINDING DOMAIN OF THE ANTITERMINATOR PROTEIN SACY, NMR, 10 STRUCTURES

Kochoyan, M.

(1997) EMBO J 16: 5019-5029

Released	1997-11-12
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	SACY (protein)

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1AW6 \| pdb_00001aw6	Download File View File

GAL4 (CD), NMR, 24 STRUCTURES

Baleja, J.D., Wagner, G.

(1997) J Biomol NMR 10: 397-401

Released	1998-04-15
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	GAL4 (CD) (protein)
Unique Ligands	CD

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1B6Q \| pdb_00001b6q	Download File View File

ALANINE 31 PROLINE MUTANT OF ROP PROTEIN

Glykos, N., Cesareni, G., Kokkinidis, M.

(1999) Structure 7: 597-603

Released	1999-07-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	ROP (protein)

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1BAZ \| pdb_00001baz	Download File View File

ARC REPRESSOR MUTANT PHE10VAL

Schildbach, J.F., Raumann, B.E., Sauer, R.T.

(1999) Proc Natl Acad Sci U S A 96: 811-817

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lederbergvirus P22
Macromolecule	ARC REPRESSOR (protein)

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1BBY \| pdb_00001bby	Download File View File

DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE

Groft, C.M., Uljon, S.N., Wang, R., Werner, M.H.

(1998) Proc Natl Acad Sci U S A 95: 9117-9122

Released	1998-11-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	RAP30 (protein)

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1BIA \| pdb_00001bia	Download File View File

THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS

Wilson, K.P., Shewchuk, L.M., Matthews, B.W.

(1992) Proc Natl Acad Sci U S A 89: 9257-9261

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	BirA BIFUNCTIONAL PROTEIN (protein)

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1BIB \| pdb_00001bib	Download File View File

THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS

Wilson, K.P., Shewchuk, L.M., Matthews, B.W.

(1992) Proc Natl Acad Sci U S A 89: 9257-9261

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	BIR A (protein)
Unique Ligands	BTN

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1BJZ \| pdb_00001bjz	Download File View File

TETRACYCLINE CHELATED MG2+-ION INITIATES HELIX UNWINDING FOR TET REPRESSOR INDUCTION

Orth, P., Saenger, W., Hinrichs, W.

(1999) Biochemistry 38: 191-198

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	TETRACYCLINE REPRESSOR (protein)

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1BOR \| pdb_00001bor	Download File View File

TRANSCRIPTION FACTOR PML, A PROTO-ONCOPROTEIN, NMR, 1 REPRESENTATIVE STRUCTURE AT PH 7.5, 30 C, IN THE PRESENCE OF ZINC

Borden, K.L.B., Freemont, P.S.

(1995) EMBO J 14: 1532-1541

Released	1997-04-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TRANSCRIPTION FACTOR PML (protein)
Unique Ligands	ZN

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1BY9 \| pdb_00001by9	Download File View File

CRYSTAL STRUCTURE OF THE E2 DNA-BINDING DOMAIN FROM HUMAN PAPILLOMAVIRUS TYPE-16: IMPLICATIONS FOR ITS DNA BINDING-SITE SELECTION MECHANISM

Hegde, R.S., Androphy, E.J.

(1998) J Mol Biology 284: 1479-1489

Released	1999-04-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human papillomavirus 16
Macromolecule	REGULATORY PROTEIN E2 (protein)

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1CLD \| pdb_00001cld	Download File View File

DNA-binding protein

Gardner, K.H., Coleman, J.E.

(1995) Nat Struct Biol 2: 898-905

Released	1995-09-15
Method	SOLUTION NMR
Organisms	Kluyveromyces lactis
Macromolecule	CD2-LAC9 (protein)
Unique Ligands	CD

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1CSP \| pdb_00001csp	Download File View File

CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS MAJOR COLD SHOCK PROTEIN, CSPB: A UNIVERSAL NUCLEIC-ACID BINDING DOMAIN

Schindelin, H., Heinemann, U.

(1993) Nature 364: 164-168

Released	1995-05-12
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Bacillus subtilis
Macromolecule	COLD SHOCK PROTEIN B(CSPB) (protein)

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1CSQ \| pdb_00001csq	Download File View File

CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS MAJOR COLD SHOCK PROTEIN, CSPB: A UNIVERSAL NUCLEIC-ACID BINDING DOMAIN

Schindelin, H., Heinemann, U.

(1993) Nature 364: 164-168

Released	1995-05-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus subtilis
Macromolecule	COLD SHOCK PROTEIN B(CSPB) (protein)

1 to 25 of 127 Structures

Page 1 of 6

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A3C | pdb_00001a3c

1A4X | pdb_00001a4x

1A6I | pdb_00001a6i

1A7G | pdb_00001a7g

1AD6 | pdb_00001ad6

1ADN | pdb_00001adn

1ADR | pdb_00001adr

1AJY | pdb_00001ajy

1AL3 | pdb_00001al3

1ARD | pdb_00001ard

1ARE | pdb_00001are

1ARF | pdb_00001arf

1AUU | pdb_00001auu

1AW6 | pdb_00001aw6

1B6Q | pdb_00001b6q

1BAZ | pdb_00001baz

1BBY | pdb_00001bby

1BIA | pdb_00001bia

1BIB | pdb_00001bib

1BJZ | pdb_00001bjz

1BOR | pdb_00001bor

1BY9 | pdb_00001by9

1CLD | pdb_00001cld

1CSP | pdb_00001csp

1CSQ | pdb_00001csq