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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSLATION/RNA"

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Search Summary

This query matches 40 Structures.

Refinements

Structure Determination Methodology

experimental (40)

Scientific Name of Source Organism

	Homo sapiens (19)
	Pseudomonas fluorescens (6)
	Escherichia coli (5)
	Hepatitis delta virus (2)
	Moorella thermoacetica (2)
	Mus musculus (2)
	Saccharomyces cerevisiae (2)
	synthetic construct (2)
	Arabidopsis thaliana (1)
	Bacillus subtilis (1)

More...

Taxonomy

	Eukaryota (25)
	Bacteria (15)
	Archaea (3)
	Ribozyviria (2)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (29)
	SOLUTION NMR (6)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (40)
	RNA (37)

Refinement Resolution (Å)

	2.0 - 2.5 (11)
	2.5 - 3.0 (13)
	3.0 - 3.5 (5)
	> 4.5 (5)

Release Date

	2000 - 2004 (15)
	2005 - 2009 (8)
	2010 - 2014 (11)
	2015 - 2019 (4)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (8)

Symmetry Type

	Asymmetric (32)
	Cyclic (9)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a+b) (16)
	All alpha proteins (3)
	Artifacts (2)
	Alpha and beta proteins (a/b) (1)
	Low resolution protein structures (1)

AllSelected

1 to 25 of 40 Structures

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1KQ2 \| pdb_00001kq2	Download File View File

Crystal Structure of an Hfq-RNA Complex

Schumacher, M.A., Pearson, R.F., Moller, T., Valentin-Hansen, P., Brennan, R.G.

(2002) EMBO J 21: 3546-3556

Released	2002-07-05
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Staphylococcus aureus
Macromolecule	Host factor for Q beta (protein) 5'-R(APUPUPUPUPUP*G)-3' (nucleic acid)

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1LS2 \| pdb_00001ls2	Download File View File

Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome

Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.

(2002) EMBO J 21: 3557-3567

Released	2002-06-26
Method	ELECTRON MICROSCOPY 16.8 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	Elongation Factor Tu (protein) Phenylalanine transfer RNA (nucleic acid)

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1M5K \| pdb_00001m5k	Download File View File

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Rupert, P.B., Ferre-D'Amare, A.R.

(2002) Science 298: 1421-1424

Released	2002-08-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A) (protein) RNA HAIRPIN RIBOZYME (nucleic acid) RNA INHIBITOR SUBSTRATE (nucleic acid)
Unique Ligands	CA, CL

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1M5O \| pdb_00001m5o	Download File View File

Transition State Stabilization by a Catalytic RNA

Rupert, P.B., Massey, A.P., Sigurdsson, S.T., Ferre-D'Amare, A.R.

(2002) Science 298: 1421-1424

Released	2002-10-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) RNA SUBSTRATE (nucleic acid) RNA HAIRPIN RIBOZYME (nucleic acid)
Unique Ligands	CA

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1M5P \| pdb_00001m5p	Download File View File

Transition State Stabilization by a Catalytic RNA

Rupert, P.B., Massey, A., Sigurdsson, S.T., Ferre-D'Amare, A.R.

(2002) Science 298: 1421-1424

Released	2002-10-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) RNA HAIRPIN RIBOZYME (nucleic acid) RNA INHIBITOR SUBSTRATE (nucleic acid)
Unique Ligands	CA

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1M5V \| pdb_00001m5v	Download File View File

Transition State Stabilization by a Catalytic RNA

Rupert, P.B., Massey, A.P., Sigurdsson, S.T., Ferre-D'Amare, A.R.

(2002) Science 298: 1421-1424

Released	2002-10-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) RNA HAIRPIN RIBOZYME (nucleic acid) RNA INHIBITOR SUBSTRATE (nucleic acid)
Unique Ligands	CA, MPD

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1SJ3 \| pdb_00001sj3	Download File View File

Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound

Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hepatitis delta virus Homo sapiens
Macromolecule	small nuclear ribonucleoprotein A (protein) precursor form of the Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	MG

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1SJ4 \| pdb_00001sj4	Download File View File

Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Hepatitis delta virus Homo sapiens
Macromolecule	small nuclear ribonucleoprotein A (protein) precursor form of the Hepatitis Delta virus ribozyme (nucleic acid)

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1SJF \| pdb_00001sjf	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	NCO

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1VBX \| pdb_00001vbx	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)

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1VBY \| pdb_00001vby	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	MN, NA

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1VBZ \| pdb_00001vbz	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	BA

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1VC0 \| pdb_00001vc0	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	SR

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1VC5 \| pdb_00001vc5	Download File View File

Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	NA

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1VC6 \| pdb_00001vc6	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	MG

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1WSU \| pdb_00001wsu	Download File View File

C-terminal domain of elongation factor selB complexed with SECIS RNA

Yoshizawa, S., Rasubala, L., Ose, T., Kohda, D., Fourmy, D., Maenaka, K.

(2005) Nat Struct Mol Biol 12: 198-203

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Moorella thermoacetica
Macromolecule	Selenocysteine-specific elongation factor (protein) 5'-R(GPGPCPGPUPUPGPCPCPGPGPUPCPUGPGPCPAPAPCPGPCP*C)-3' (nucleic acid)

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1ZO1 \| pdb_00001zo1	Download File View File

IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex

Allen, G.S., Zavialov, A., Gursky, R., Ehrenberg, M., Frank, J.

(2005) Cell 121: 703-712

Released	2005-06-14
Method	ELECTRON MICROSCOPY 13.8 Å
Organisms	Escherichia coli
Macromolecule	translation Initiation Factor 1 (protein) translation initiation factor 2 (protein) P/I-site tRNA (nucleic acid)

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2GJE \| pdb_00002gje	Download File View File

Structure of a guideRNA-binding protein complex bound to a gRNA

Schumacher, M.A., Karamooz, E., Zikova, A., Trantirek, L., Lukes, J.

(2006) Cell 126: 701-711

Released	2006-09-05
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Trypanosoma brucei brucei TREU927
Macromolecule	mitochondrial RNA-binding protein 1 (protein) mitochondrial RNA-binding protein 2 (protein) RNA tetramer (nucleic acid) guide RNA 40-mer (nucleic acid)

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2GO5 \| pdb_00002go5	Download File View File

Structure of signal recognition particle receptor (SR) in complex with signal recognition particle (SRP) and ribosome nascent chain complex

Halic, M., Gartmann, M., Schlenker, O., Mielke, T., Pool, M.R., Sinning, I., Beckmann, R.

(2006) Science 312: 745-747

Released	2006-06-13
Method	ELECTRON MICROSCOPY 7.4 Å
Organisms	Canis sp. Homo sapiens Mus musculus Triticum sp.
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2

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2JPP \| pdb_00002jpp	Download File View File

Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA

Schubert, M., Lapouge, K., Duss, O., Oberstrass, F.C., Jelesarov, I., Haas, D., Allain, F.H.-T.

(2007) Nat Struct Mol Biol 14: 807-813

Released	2007-08-21
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Translational repressor (protein) RNA (5'-R(GPGPGPCPUPUPCPAPCPGPGPAPUPGPAPAPGPCPCPC)-3') (nucleic acid)

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2MFC \| pdb_00002mfc	Download File View File

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL1)/RsmE(dimer) 2:1 complex

Duss, O., Diarra Dit Konte, N., Michel, E., Schubert, M., Allain, F.H.-T.

(2014) Nucleic Acids Res 42: 5332-5346

Released	2014-02-26
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Carbon storage regulator homolog (protein) SL1(RsmZ) RNA (nucleic acid)

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2MFE \| pdb_00002mfe	Download File View File

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL2)/RsmE(dimer) 2:1 complex

Duss, O., Diarra Dit Konte, N., Michel, E., Schubert, M., Allain, F.H.-T.

(2014) Nucleic Acids Res 42: 5332-5346

Released	2014-02-26
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Carbon storage regulator homolog (protein) SL2(RsmZ) RNA (nucleic acid)

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2MFF \| pdb_00002mff	Download File View File

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL3)/RsmE(dimer) 2:1 complex

Duss, O., Diarra Dit Konte, N., Michel, E., Schubert, M., Allain, F.H.-T.

(2014) Nucleic Acids Res 42: 5332-5346

Released	2014-02-26
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Carbon storage regulator homolog (protein) SL3(RsmZ) RNA (nucleic acid)

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2MFG \| pdb_00002mfg	Download File View File

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(SL4)/RsmE(dimer) 2:1 complex

Duss, O., Diarra Dit Konte, N., Michel, E., Schubert, M., Allain, F.H.-T.

(2014) Nucleic Acids Res 42: 5332-5346

Released	2014-02-26
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Carbon storage regulator homolog (protein) SL4(RsmZ) RNA (nucleic acid)

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2MFH \| pdb_00002mfh	Download File View File

Csr/Rsm protein-RNA recognition - A molecular affinity ruler: RsmZ(36-44)/RsmE(dimer) 2:1 complex

Duss, O., Diarra Dit Konte, N., Michel, E., Schubert, M., Allain, F.H.-T.

(2014) Nucleic Acids Res 42: 5332-5346

Released	2014-02-26
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Carbon storage regulator homolog (protein) RsmZ(36-44) RNA (nucleic acid)

1 to 25 of 40 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KQ2 | pdb_00001kq2

1LS2 | pdb_00001ls2

1M5K | pdb_00001m5k

1M5O | pdb_00001m5o

1M5P | pdb_00001m5p

1M5V | pdb_00001m5v

1SJ3 | pdb_00001sj3

1SJ4 | pdb_00001sj4

1SJF | pdb_00001sjf

1VBX | pdb_00001vbx

1VBY | pdb_00001vby

1VBZ | pdb_00001vbz

1VC0 | pdb_00001vc0

1VC5 | pdb_00001vc5

1VC6 | pdb_00001vc6

1WSU | pdb_00001wsu

1ZO1 | pdb_00001zo1

2GJE | pdb_00002gje

2GO5 | pdb_00002go5

2JPP | pdb_00002jpp

2MFC | pdb_00002mfc

2MFE | pdb_00002mfe

2MFF | pdb_00002mff

2MFG | pdb_00002mfg

2MFH | pdb_00002mfh