Download MendeleyMechanisms of Enzyme-Catalyzed Deprotonation of Acetyl-Coenzyme A
Schwartz, B., Vogel, K.W., Usher, K.C., Narasimhan, C., Miziorko, H.M., Remington, S.J., Drueckhammer, D.G.To be published.
1AMZ
CHICKEN CITRATE SYNTHASE COMPLEX WITH NITROMETHYLDE-COA AND MALATE
- PDB DOI: https://doi.org/10.2210/pdb1AMZ/pdb
- Classification: OXO-ACID-LYASE
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 1997-06-19 Released: 1997-12-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Work: 0.154
Starting Model: experimental
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This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CITRATE SYNTHASE | 435 | Gallus gallus | Mutation(s): 0 EC: 4.1.3.7 (PDB Primary Data), 2.3.3.1 (UniProt) |  | |
UniProt | |||||
Find proteins for P23007 (Gallus gallus) Explore P23007 Go to UniProtKB: P23007 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P23007 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NMX Query on NMX | C [auth A] | NITROMETHYLDETHIA COENZYME A C22 H37 N8 O18 P3 PUGKTLRHGHIDCJ-GORZOVPNSA-N |  | ||
| MLT Query on MLT | B [auth A] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Work: 0.154
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.127 | α = 90 |
| b = 78.5 | β = 78.93 |
| c = 58.42 | γ = 90 |
| Software Name | Purpose |
|---|---|
| TNT | refinement |
| SDMS | data reduction |
| SDMS | data scaling |
| TNT | phasing |
Entry History
Deposition Data
- Released Date: 1997-12-24 Deposition Author(s): Usher, K.C., Remington, S.J.
Revision History (Full details and data files)
- Version 1.0: 1997-12-24
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2017-11-29
Changes: Advisory - Version 1.4: 2023-08-02
Changes: Advisory, Database references, Derived calculations, Refinement description - Version 1.5: 2024-12-25
Changes: Advisory, Data collection, Derived calculations, Structure summary
