Download MendeleyCrystal Structure of Cytochrome C' from Rhodocyclus Gelatinosus and Comparison with Other Cytochromes C'
Archer, M., Banci, L., Dikaya, E., Romao, M.J.(1997) J Biol Inorg Chem 2: 611
1JAF | pdb_00001jaf
CRYSTAL STRUCTURE OF CYTOCHROME C' FROM RHODOCYCLUS GELATINOSUS AT 2.5 ANGSTOMS RESOLUTION
- PDB DOI: https://doi.org/10.2210/pdb1JAF/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Rubrivivax gelatinosus
- Mutation(s): No
- Deposited: 1997-06-24 Released: 1998-01-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.221 (Depositor)
- R-Value Work: 0.179 (Depositor)
- R-Value Observed: 0.179 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CYTOCHROME C' | 129 | Rubrivivax gelatinosus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P00142 (Rubrivivax gelatinosus) Explore P00142 Go to UniProtKB: P00142 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00142 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A], D [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.221 (Depositor)
- R-Value Work: 0.179 (Depositor)
- R-Value Observed: 0.179 (Depositor)
Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.18 | α = 90 |
| b = 70.18 | β = 90 |
| c = 126.85 | γ = 120 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| X-PLOR | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 1998-01-21 Deposition Author(s): Archer, M., Banci, L., Dikaya, E., Romao, M.J.
Revision History (Full details and data files)
- Version 1.0: 1998-01-21
Type: Initial release - Version 1.1: 2008-03-03
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-09
Changes: Database references, Derived calculations, Refinement description - Version 1.4: 2024-10-09
Changes: Data collection, Structure summary
