Download MendeleyCrystal Structure of the complex formed between group II phospholipase A2 and a plant alkaloid ajmaline at 2.0A resolution
Mahendra, M., Singh, N., Kaur, P., Sharma, S., Singh, T.P.To be published.
1ZR8 | pdb_00001zr8
Crystal Structure of the complex formed between group II phospholipase A2 and a plant alkaloid ajmaline at 2.0A resolution
- PDB DOI: https://doi.org/10.2210/pdb1ZR8/pdb
- Classification: HYDROLASE
- Organism(s): Daboia russelii pulchella
- Mutation(s): No
- Deposited: 2005-05-19 Released: 2005-06-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.221 (Depositor)
- R-Value Work: 0.186 (Depositor)
- R-Value Observed: 0.190 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phospholipase A2 VRV-PL-VIIIa | 121 | Daboia russelii pulchella | Mutation(s): 0 EC: 3.1.1.4 |  | |
UniProt | |||||
Find proteins for P59071 (Daboia russelii) Explore P59071 Go to UniProtKB: P59071 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P59071 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AJM Query on AJM | D [auth A] | AJMALINE C18 H22 N2 O2 CFEPCEVMXPTZPJ-OGDRVKPDSA-N |  | ||
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACY Query on ACY | E [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.221 (Depositor)
- R-Value Work: 0.186 (Depositor)
- R-Value Observed: 0.190 (Depositor)
Space Group: P 43
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.257 | α = 90 |
| b = 53.257 | β = 90 |
| c = 48.657 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2005-06-14 Deposition Author(s): Mahendra, M., Singh, N., Kaur, P., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2005-06-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-23
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2024-10-30
Changes: Structure summary
