Download MendeleyCrystal structure of hypothetical metalloprotein yiiX from Escherichia coli O157:H7
Bonanno, J.B., Gilmore, J., Bain, K.T., Powell, A., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
2IF6 | pdb_00002if6
Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105
- PDB DOI: https://doi.org/10.2210/pdb2IF6/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Escherichia coli O157:H7
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-09-20 Released: 2006-10-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.231 (Depositor), 0.240 (DCC)
- R-Value Work: 0.179 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.181 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein yiiX | 186 | Escherichia coli O157:H7 | Mutation(s): 0 Gene Names: yiiX, ECs4866, Z5492 |  | |
UniProt | |||||
Find proteins for Q8X778 (Escherichia coli O157:H7) Explore Q8X778 Go to UniProtKB: Q8X778 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8X778 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UNX Query on UNX | C [auth A], D [auth B] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.231 (Depositor), 0.240 (DCC)
- R-Value Work: 0.179 (Depositor), 0.180 (DCC)
- R-Value Observed: 0.181 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 32.345 | α = 90 |
| b = 152.594 | β = 92.67 |
| c = 48.74 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2006-10-03 Deposition Author(s): Bonanno, J.B., Gilmore, J., Bain, K.T., Powell, A., Ozyurt, S., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-10-03
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2018-11-14
Changes: Data collection, Structure summary - Version 1.5: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.6: 2024-02-21
Changes: Data collection, Database references
