Download MendeleyX-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with by Phosphate Ion at 1.5A Resolution
Lashkov, A.A., Mikhailov, A.M., Gabdoulkhakov, A.G.To be published.
3DDO
X-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with by Phosphate Ion at 1.5A Resolution
- PDB DOI: https://doi.org/10.2210/pdb3DDO/pdb
- Classification: TRANSFERASE
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-06-06 Released: 2009-06-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.212
- R-Value Work: 0.166
- R-Value Observed: 0.169
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | 253 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 0 Gene Names: udp, STM3968, STMD1.21 EC: 2.4.2.3 |  | |
UniProt | |||||
Find proteins for P0A1F6 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0A1F6 Go to UniProtKB: P0A1F6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A1F6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | G [auth A], H [auth B], I [auth C], J [auth D], K [auth F] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.212
- R-Value Work: 0.166
- R-Value Observed: 0.169
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.6 | α = 90 |
| b = 124.92 | β = 90 |
| c = 134.93 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| EMBL | data collection |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2009-06-09 Deposition Author(s): Lashkov, A.A., Mikhailov, A.M., Gabdoulkhakov, A.G.
Revision History (Full details and data files)
- Version 1.0: 2009-06-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
