Download MendeleyThe Crystal Structure of a USP-like protein from Wolinella succinogenes to 2.0A
Stein, A.J., Sather, A., Shackelford, G., Joachimiak, A.To be published.
3IDF | pdb_00003idf
The Crystal Structure of a USP-like protein from Wolinella succinogenes to 2.0A
- PDB DOI: https://doi.org/10.2210/pdb3IDF/pdb
- Classification: structural genomics, unknown function
- Organism(s): Wolinella succinogenes
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-07-21 Released: 2009-08-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.217 (Depositor), 0.250 (DCC)
- R-Value Work: 0.182 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.184 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| USP-like protein | 138 | Wolinella succinogenes | Mutation(s): 0 Gene Names: ORF138, WS0834 |  | |
UniProt | |||||
Find proteins for O34252 (Wolinella succinogenes) Explore O34252 Go to UniProtKB: O34252 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O34252 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.217 (Depositor), 0.250 (DCC)
- R-Value Work: 0.182 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.184 (Depositor)
Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.768 | α = 90 |
| b = 89.768 | β = 90 |
| c = 127.286 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| MLPHARE | phasing |
| DM | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2009-08-04 Deposition Author(s): Stein, A.J., Sather, A., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-08-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
