Download MendeleyCrystal structure of the dehydrogenase part of multifuctional enzyme 1 from C.elegans
Ouyang, Z., Zhang, K., Zhai, Y., Lu, J., Sun, F.To be published.
3K6J | pdb_00003k6j
Crystal structure of the dehydrogenase part of multifuctional enzyme 1 from C.elegans
- PDB DOI: https://doi.org/10.2210/pdb3K6J/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Caenorhabditis elegans
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-10-09 Released: 2010-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.267 (Depositor), 0.220 (DCC)
- R-Value Work: 0.210 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.213 (Depositor)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein F01G10.3, confirmed by transcript evidence | 460 | Caenorhabditis elegans | Mutation(s): 0 Gene Names: ech-9, F01G10.3 |  | |
UniProt | |||||
Find proteins for O17762 (Caenorhabditis elegans) Explore O17762 Go to UniProtKB: O17762 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O17762 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A], D [auth A], E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| ZN Query on ZN | F [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.267 (Depositor), 0.220 (DCC)
- R-Value Work: 0.210 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.213 (Depositor)
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.025 | α = 90 |
| b = 90.657 | β = 90 |
| c = 66.206 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| PHASER | phasing |
| OASIS | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| OASIS | phasing |
Entry History
Deposition Data
- Released Date: 2010-10-13 Deposition Author(s): Ouyang, Z., Zhang, K., Zhai, Y., Lu, J., Sun, F.
Revision History (Full details and data files)
- Version 1.0: 2010-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
