Download MendeleyCrystal structure of CAD domain of the Plasmodium Vivax CDPK, PVX_11610
Wernimont, A.K., Hutchinson, A., Sullivan, H., Weadge, J., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R., Amani, M.To be published.
3O4Y | pdb_00003o4y
Crystal structure of CAD domain of the Plasmodium Vivax CDPK, PVX_11610
- PDB DOI: https://doi.org/10.2210/pdb3O4Y/pdb
- Classification: TRANSFERASE
- Organism(s): Plasmodium vivax
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-07-27 Released: 2010-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.275 (Depositor), 0.300 (DCC)
- R-Value Work: 0.235 (Depositor), 0.280 (DCC)
- R-Value Observed: 0.237 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Calcium-dependent protein kinase 3 | 196 | Plasmodium vivax | Mutation(s): 0 Gene Names: PVX_119610 |  | |
UniProt | |||||
Find proteins for A5KBB4 (Plasmodium vivax (strain Salvador I)) Explore A5KBB4 Go to UniProtKB: A5KBB4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5KBB4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CA Query on CA | B [auth A], C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.275 (Depositor), 0.300 (DCC)
- R-Value Work: 0.235 (Depositor), 0.280 (DCC)
- R-Value Observed: 0.237 (Depositor)
Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.106 | α = 90 |
| b = 84.858 | β = 90 |
| c = 85.757 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2010-08-25 Deposition Author(s): Wernimont, A.K., Hutchinson, A., Sullivan, H., Weadge, J., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R., Amani, M., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2010-08-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
