Download MendeleyCrystal Structure of the fifth bromodomain of human PB1 in complex with a hydroxyphenyl ligand
Filippakopoulos, P., Picaud, S., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Owen, D., Knapp, S.To be published.
5E7D
Crystal Structure of the fifth bromodomain of human PB1 in complex with a hydroxyphenyl ligand
- PDB DOI: https://doi.org/10.2210/pdb5E7D/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-10-12 Released: 2016-10-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.87 Å
- R-Value Free: 0.248
- R-Value Work: 0.201
- R-Value Observed: 0.203
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein polybromo-1 | 124 | Homo sapiens | Mutation(s): 0 Gene Names: PBRM1, BAF180, PB1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q86U86 (Homo sapiens) Explore Q86U86 Go to UniProtKB: Q86U86 | |||||
PHAROS: Q86U86 GTEx: ENSG00000163939 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q86U86 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5KL Query on 5KL | E [auth A], F [auth B], G [auth C], H [auth D] | (2E)-3-(dimethylamino)-1-(2-hydroxyphenyl)prop-2-en-1-one C11 H13 N O2 SVBCOAAIOJDZNC-BQYQJAHWSA-N |  | ||
| EDO Query on EDO | I [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.87 Å
- R-Value Free: 0.248
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.79 | α = 90 |
| b = 135.664 | β = 90.6 |
| c = 56.045 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2016-10-12 Deposition Author(s): Filippakopoulos, P., Picaud, S., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Owen, D., Knapp, S., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2016-10-12
Type: Initial release - Version 1.1: 2024-05-08
Changes: Data collection, Database references
