Download MendeleyCrystal structure of Thaumatin (100 ms)
Nam, K.H.To be published.
8HVF
Crystal structure of Thaumatin (100 ms)
- PDB DOI: https://doi.org/10.2210/pdb8HVF/pdb
- Classification: PLANT PROTEIN
- Organism(s): Thaumatococcus daniellii
- Mutation(s): No
- Deposited: 2022-12-26 Released: 2023-11-08
- Funding Organization(s): National Research Foundation (NRF, Korea)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.13 Å
- R-Value Free: 0.179
- R-Value Work: 0.168
- R-Value Observed: 0.168
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thaumatin I | 207 | Thaumatococcus daniellii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883 Go to UniProtKB: P02883 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02883 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA (Subject of Investigation/LOI) Query on TLA | B [auth A] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | ||
| EDO (Subject of Investigation/LOI) Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.13 Å
- R-Value Free: 0.179
- R-Value Work: 0.168
- R-Value Observed: 0.168
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.931 | α = 90 |
| b = 57.931 | β = 90 |
| c = 150.52 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| xia2 | data reduction |
| xia2 | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-11-08 Deposition Author(s): Nam, K.H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation (NRF, Korea) | Korea, Republic Of | NRF-2017M3A9F6029736 |
| National Research Foundation (NRF, Korea) | Korea, Republic Of | NRF-2021R1I1A1A01050838 |
| National Research Foundation (NRF, Korea) | Korea, Republic Of | NRF-2020M3H1A1075314 |
Revision History (Full details and data files)
- Version 1.0: 2023-11-08
Type: Initial release - Version 1.1: 2024-11-13
Changes: Structure summary
