Download MendeleyGlucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin
Arold, S.T., Hameed, U.F.S.To be published.
8J2V
Glucosyl transferase NbUGT72AY1 co-crystallized with Scopoletin
- PDB DOI: https://doi.org/10.2210/pdb8J2V/pdb
- Classification: TRANSFERASE
- Organism(s): Nicotiana tabacum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-04-15 Released: 2024-04-17
- Funding Organization(s): Other private
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.228
- R-Value Work: 0.194
- R-Value Observed: 0.196
Starting Model: in silico
View more details
This is version 3.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycosyltransferase | 475 | Nicotiana tabacum | Mutation(s): 0 EC: 2.4.1 |  | |
UniProt | |||||
Find proteins for A0A8K1ZRH3 (Nicotiana benthamiana) Explore A0A8K1ZRH3 Go to UniProtKB: A0A8K1ZRH3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8K1ZRH3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| T83 (Subject of Investigation/LOI) Query on T83 | B [auth A] | 7-hydroxy-6-methoxy-2H-1-benzopyran-2-one C10 H8 O4 RODXRVNMMDRFIK-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.228
- R-Value Work: 0.194
- R-Value Observed: 0.196
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 83.58 | α = 90 |
| b = 103.66 | β = 90 |
| c = 54 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-04-17 Deposition Author(s): Arold, S.T., Hameed, U.F.S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Other private | Saudi Arabia | King Abdullah University of Science and Technology |
Revision History (Full details and data files)
- Version 1.0: 2024-04-17
Type: Initial release - Version 2.0: 2024-09-04
Type: Coordinate replacement
Reason: Atoms with unrealistic or zero occupancies
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Refinement description, Structure summary - Version 3.0: 2024-12-18
Type: Coordinate replacement
Reason: Ligand geometry
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Refinement description, Source and taxonomy, Structure summary
