9AV8

Design and application of synthetic 17B-HSD13 substrates to drug discovery, and to reveal preserved catalytic activity of protective human variants


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.306 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.253 

Starting Model: experimental
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Literature

Design and application of synthetic 17B-HSD13 substrates reveals preserved catalytic activity of protective human variants.

Garnsey, M.R.Wang, Y.Edmonds, D.J.Sammons, M.F.Reidich, B.Ahn, Y.Ashkenazi, Y.Carlo, A.Cerny, M.A.Coffman, K.J.Culver, J.A.Dechert Schmitt, A.M.Eng, H.Fisher, E.L.Gutierrez, J.A.James, L.Jordan, S.Kohrt, J.T.Kramer, M.LaChapelle, E.A.Lee, J.C.Lee, J.Li, D.Li, Z.Liu, S.Liu, J.Magee, T.V.Miller, M.R.Moran, M.Nason, D.M.Nedoma, N.L.O'Neil, S.V.Piotrowski, M.A.Racich, J.Sommese, R.F.Stevens, L.M.Wright, A.S.Xiao, J.Zhang, L.Zhou, D.Barrandon, O.Clasquin, M.F.

(2025) Nat Commun 16: 297-297

  • DOI: https://doi.org/10.1038/s41467-024-54487-5
  • Primary Citation of Related Structures:  
    9AV4, 9AV5, 9AV8

  • PubMed Abstract: 

    Several hydroxysteroid dehydrogenase 17-beta 13 variants have previously been identified as protective against metabolic dysfunction-associated steatohepatitis (MASH) fibrosis, ballooning and inflammation, and as such this target holds significant therapeutic potential. However, over 5 years later, the function of 17B-HSD13 remains unknown. Structure-aided design enables the development of potent and selective sulfonamide-based 17B-HSD13 inhibitors. In order to probe their inhibitory potency in endogenous expression systems like primary human hepatocytes, inhibitors are transformed into synthetic surrogate substrates with distinct selectivity advantages over substrates previously published. Their application to cells endogenously expressing 17B-HSD13 enables quantitative measures of enzymatic inhibition in primary human hepatocytes which has never been reported to date. Application to multiple cellular systems expressing the protective human variants reveals that the most prevalent IsoD variant maintains NAD-dependent catalytic activity towards some but not all substrates, contradicting reports that the truncation results in loss-of-function.


  • Organizational Affiliation

    Pfizer, Inc., Cambridge, MA, 02139, USA. michelle.garnsey@pfizer.com.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hydroxysteroid 17-beta dehydrogenase 13
A, B
315Homo sapiensMutation(s): 9 
Gene Names: HSD17B13HSD17B11
UniProt
Find proteins for A0A8C0PP93 (Canis lupus familiaris)
Explore A0A8C0PP93 
Go to UniProtKB:  A0A8C0PP93
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8C0PP93
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.306 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.253 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.68α = 90
b = 185.24β = 90
c = 64.45γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
autoPROCdata reduction
autoPROCdata scaling
BUSTERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-27
    Type: Initial release
  • Version 1.1: 2025-01-15
    Changes: Database references