1HT1 | pdb_00001ht1

Nucleotide-Dependent Conformational Changes in a Protease-Associated ATPase HslU


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.309 (Depositor), 0.300 (DCC) 
  • R-Value Work: 
    0.261 (Depositor), 0.260 (DCC) 

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Ligand Structure Quality Assessment 

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This is version 1.5 of the entry. See complete history


Literature

Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU.

Wang, J.Song, J.J.Seong, I.S.Franklin, M.C.Kamtekar, S.Eom, S.H.Chung, C.H.

(2001) Structure 9: 1107-1116

  • DOI: https://doi.org/10.1016/s0969-2126(01)00670-0
  • Primary Citation of Related Structures:  
    1HQY, 1HT1, 1HT2

  • PubMed Abstract: 

    The bacterial heat shock locus ATPase HslU is an AAA(+) protein that has structures known in many nucleotide-free and -bound states. Nucleotide is required for the formation of the biologically active HslU hexameric assembly. The hexameric HslU ATPase binds the dodecameric HslV peptidase and forms an ATP-dependent HslVU protease. We have characterized four distinct HslU conformational states, going sequentially from open to closed: the empty, SO(4), ATP, and ADP states. The nucleotide binds at a cleft formed by an alpha/beta domain and an alpha-helical domain in HslU. The four HslU states differ by a rotation of the alpha-helical domain. This classification leads to a correction of nucleotide identity in one structure and reveals the ATP hydrolysis-dependent structural changes in the HslVU complex, including a ring rotation and a conformational change of the HslU C terminus. This leads to an amended protein unfolding-coupled translocation mechanism. The observed nucleotide-dependent conformational changes in HslU and their governing principles provide a framework for the mechanistic understanding of other AAA(+) proteins.


  • Organizational Affiliation

    Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06520, USA. wang@mail.csb.yale.edu


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
HEAT SHOCK LOCUS HSLV175Escherichia coli BL21(DE3)Mutation(s): 0 
EC: 3.4.25.2
UniProt
Find proteins for P0A7B8 (Escherichia coli (strain K12))
Explore P0A7B8 
Go to UniProtKB:  P0A7B8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A7B8
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
HEAT SHOCK LOCUS HSLUI [auth E],
J [auth F],
K [auth G],
L [auth I]
449Escherichia coli BL21(DE3)Mutation(s): 0 
UniProt
Find proteins for P0A6H5 (Escherichia coli (strain K12))
Explore P0A6H5 
Go to UniProtKB:  P0A6H5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A6H5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.309 (Depositor), 0.300 (DCC) 
  • R-Value Work:  0.261 (Depositor), 0.260 (DCC) 
Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 172.022α = 90
b = 172.022β = 90
c = 276.569γ = 120
Software Package:
Software NamePurpose
CNSrefinement

Structure Validation

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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ADPClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-11-14
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.3: 2013-09-25
    Changes: Derived calculations
  • Version 1.4: 2016-08-10
    Changes: Derived calculations
  • Version 1.5: 2024-02-07
    Changes: Data collection, Database references, Derived calculations