Download MendeleyDesigned protein based on backbone conformation of procarboxypeptidase-A (1AYE) with sidechains chosen for maximal predicted stability.
Kuhlman, B., Dantas, G., Merritt, E.A., Baker, D.To be published.
1VJQ | pdb_00001vjq
Designed protein based on backbone conformation of procarboxypeptidase-A (1AYE) with sidechains chosen for maximal predicted stability.
- PDB DOI: https://doi.org/10.2210/pdb1VJQ/pdb
- Classification: STRUCTURAL GENOMICS, DE NOVO PROTEIN
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-03-19 Released: 2004-03-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.291 (Depositor), 0.300 (DCC)
- R-Value Work: 0.199 (Depositor), 0.200 (DCC)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| designed protein | 79 | N/A | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.291 (Depositor), 0.300 (DCC)
- R-Value Work: 0.199 (Depositor), 0.200 (DCC)
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.442 | α = 90 |
| b = 65.041 | β = 90 |
| c = 39.201 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| SHELX | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2004-03-30 Deposition Author(s): Merritt, E.A., Baker, D., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Revision History (Full details and data files)
- Version 1.0: 2004-03-30
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations - Version 1.5: 2024-10-30
Changes: Structure summary
