Download MendeleyStructure of C-terminal domain of SMU_1151c from Streptococcus mutans.
Ramagopal, U.A., Toro, R., Gilmore, M., Wu, B., Bain, K., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
2QKP | pdb_00002qkp
Crystal structure of C-terminal domain of SMU_1151c from Streptococcus mutans
- PDB DOI: https://doi.org/10.2210/pdb2QKP/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Streptococcus mutans UA159
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-07-11 Released: 2007-07-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.241 (Depositor), 0.240 (DCC)
- R-Value Work: 0.198 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.200 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 151 | Streptococcus mutans UA159 | Mutation(s): 0 Gene Names: SMU_1151c |  | |
UniProt | |||||
Find proteins for Q8DU08 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DU08 Go to UniProtKB: Q8DU08 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8DU08 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | G [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth B], F [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.241 (Depositor), 0.240 (DCC)
- R-Value Work: 0.198 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.200 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.999 | α = 90 |
| b = 53.911 | β = 106.05 |
| c = 79.924 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2007-07-24 Deposition Author(s): Ramagopal, U.A., Toro, R., Gilmore, M., Wu, B., Bain, K., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2007-07-24
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2018-11-14
Changes: Data collection, Structure summary - Version 1.5: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.6: 2024-02-21
Changes: Data collection, Database references
