Download MendeleyCrystal structure of a putative protein-disulfide isomerase from Pseudomonas syringae to 2.5A resolution.
Stein, A.J., Chhor, G., Freeman, L., Joachimiak, A.To be published.
3GN3 | pdb_00003gn3
Crystal structure of a putative protein-disulfide isomerase from Pseudomonas syringae to 2.5A resolution.
- PDB DOI: https://doi.org/10.2210/pdb3GN3/pdb
- Classification: structural genomics, unknown function
- Organism(s): Pseudomonas syringae pv. tomato
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-16 Released: 2009-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.237 (Depositor), 0.230 (DCC)
- R-Value Work: 0.206 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.207 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative protein-disulfide isomerase | 182 | Pseudomonas syringae pv. tomato | Mutation(s): 0 Gene Names: PSPTO4780, PSPTO_4780 |  | |
UniProt | |||||
Find proteins for Q87W03 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87W03 Go to UniProtKB: Q87W03 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q87W03 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A], E [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.237 (Depositor), 0.230 (DCC)
- R-Value Work: 0.206 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.207 (Depositor)
Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 151.968 | α = 90 |
| b = 151.968 | β = 90 |
| c = 115.894 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELX | model building |
| MLPHARE | phasing |
| DM | model building |
| ARP/wARP | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2009-03-31 Deposition Author(s): Stein, A.J., Chhor, G., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-03-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations
