3HKO | pdb_00003hko

Crystal structure of a cdpk kinase domain from cryptosporidium Parvum, cgd7_40

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.246 (Depositor), 0.240 (DCC) 
  • R-Value Work: 
    0.201 (Depositor), 0.200 (DCC) 
  • R-Value Observed: 
    0.204 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ANPClick on this verticalbar to view details

This is version 1.3 of the entry. See complete history. 


Literature

Crystal structure of a cdpk kinase domain from cryptosporidium Parvum, cgd7_40

Wernimont, A.K., Hutchinson, A., Wasney, G., Vedadi, M., MacKenzie, F., Kozieradzki, I., Cossar, D., Weigelt, J., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Botchkarev, A., Hui, R., Amani, M.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium/calmodulin-dependent protein kinase with a kinase domain and 2 calmodulin-like EF hands345Cryptosporidium parvum Iowa IIMutation(s): 0 
Gene Names: cgd7_40
UniProt
Find proteins for Q5CZ29 (Cryptosporidium parvum (strain Iowa II))
Explore Q5CZ29 
Go to UniProtKB:  Q5CZ29
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5CZ29
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.246 (Depositor), 0.240 (DCC) 
  • R-Value Work:  0.201 (Depositor), 0.200 (DCC) 
  • R-Value Observed: 0.204 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.48α = 90
b = 63.045β = 90
c = 84.041γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MacCHESSdata collection
PHASERphasing
RESOLVEphasing

Structure Validation

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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted ANPClick on this verticalbar to view details

View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-06-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Advisory, Refinement description
  • Version 1.3: 2023-09-06
    Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description