RCSB PDB: Search

4IJ0 \| pdb_00004ij0	Download File View File

Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation

Zhang, F., Suzuki, K., Tsunoda, M., Wilkinson, O., Millington, C.L., Williams, D.M., Morishita, E.C., Takenaka, A.

(2013) Nucleic Acids Res 41: 5524-5532

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.54 Å
Macromolecule	DNA (5'-D(CPGPCP(C6G)PAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	HT, SR

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4ITD \| pdb_00004itd	Download File View File

Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation

Zhang, F., Suzuki, K., Tsunoda, M., Wilkinson, O., Millington, C.L., Williams, D.M., Morishita, E.C., Takenaka, A.

(2013) Nucleic Acids Res 41: 5524-5532

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.94 Å
Macromolecule	DNA (5'-D(CPGPCPGP(C6G)PAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	HT, MG

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4O5W \| pdb_00004o5w	Download File View File

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine

Zhang, F., Tsunoda, M., Suzuki, K., Kikuchi, Y., Wilkinson, O., Millington, C.L., Margison, G.P., Williams, D.M., Takenaka, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1669-1679

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(CPGPCP(C6G)PAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	HT, MG, SR

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4O5X \| pdb_00004o5x	Download File View File

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine.

Zhang, F., Tsunoda, M., Suzuki, K., Kikuchi, Y., Wilkinson, O., Millington, C.L., Margison, G.P., Williams, D.M., Takenaka, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1669-1679

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(CPGPCP(C6G)PAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	HT, MG

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4O5Y \| pdb_00004o5y	Download File View File

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine

Zhang, F., Tsunoda, M., Suzuki, K., Kikuchi, Y., Wilkinson, O., Millington, C.L., Margison, G.P., Williams, D.M., Takenaka, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1669-1679

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.75 Å
Macromolecule	DNA (5'-D(CPGPCP(C6G)PAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	BA, K

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4O5Z \| pdb_00004o5z	Download File View File

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine

Zhang, F., Tsunoda, M., Suzuki, K., Kikuchi, Y., Wilkinson, O., Millington, C.L., Margison, G.P., Williams, D.M., Takenaka, A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1669-1679

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.75 Å
Macromolecule	DNA (5'-D(CPGPCP(C6G)PAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	BA, NA

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9GMB \| pdb_00009gmb	Download File View File

MukEF in complex with the phage protein gp5.9

Burmann, F., Wilkinson, O., Kimanius, D., Dillingham, M., Lowe, J.

To be published

Released	2025-03-26
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	Chromosome partition protein MukE (protein) Chromosome partition protein MukF (protein) Probable RecBCD inhibitor gp5.9 (protein)

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9GMD \| pdb_00009gmd	Download File View File

MukEF in complex with the phage protein gp5.9 (focus)

Burmann, F., Wilkinson, O., Kimanius, D., Dillingham, M., Lowe, J.

To be published

Released	2025-03-26
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	Chromosome partition protein MukE (protein) Chromosome partition protein MukF (protein) Probable RecBCD inhibitor gp5.9 (protein)

4IJ0 | pdb_00004ij0

Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation

4ITD | pdb_00004itd

Structures of DNA duplexes containing O6-carboxymethylguanine, a lesion associated with gastrointestinal cancer, reveal a mechanism for inducing transition mutation

4O5W | pdb_00004o5w

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine

4O5X | pdb_00004o5x

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine.

4O5Y | pdb_00004o5y

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine

4O5Z | pdb_00004o5z

O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine

9GMB | pdb_00009gmb

MukEF in complex with the phage protein gp5.9

9GMD | pdb_00009gmd

MukEF in complex with the phage protein gp5.9 (focus)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

4IJ0 | pdb_00004ij0

4ITD | pdb_00004itd

4O5W | pdb_00004o5w

4O5X | pdb_00004o5x

4O5Y | pdb_00004o5y

4O5Z | pdb_00004o5z

9GMB | pdb_00009gmb

9GMD | pdb_00009gmd