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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Promethearchaeum syntrophicum"

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This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

Promethearchaeum syntrophicum (8)

Taxonomy

Archaea (8)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2020 - 2024 (5)
	2025 - 2029 (3)

Enzyme Classification Name

Isomerases (1)

Symmetry Type

	Cyclic (5)
	Asymmetric (3)

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1 to 8 of 8 Structures

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7N8U \| pdb_00007n8u	Download File View File

Crystal structure of Triosephosphate isomerase from Candidatus Prometheoarchaeum syntrophicum

Vickers, C.J., Patrick, W.M., Fraga, D.

To be published

Released	2022-06-15
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Triosephosphate isomerase (protein)

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7YH1 \| pdb_00007yh1	Download File View File

Roadblock from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

Robinson, R.C., Tran, L.T.

(2024) Commun Biol 7: 273-273

Released	2023-07-19
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Roadblock/LC7 domain protein (protein)
Unique Ligands	ZN

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8WHN \| pdb_00008whn	Download File View File

Crystal Structure of the cytoplasmic domain of OST1 (Ribophorin I) from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

Robinson, R.C., Carilo, I.

(2024) J Biological Chem 300: 107673-107673

Released	2024-09-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Ribophorin 1 superfamily protein (protein)

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8YQG \| pdb_00008yqg	Download File View File

Dimeric structure of the Longin domain from a Lokiarchaeota archaeon Roadblock-Longin protein

Kitaoku, Y., Sitthisak, P., Robinson, R.C.

To be published

Released	2025-03-26
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Longin domain (protein)
Unique Ligands	MG

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8YQK \| pdb_00008yqk	Download File View File

Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P21

Kitaoku, Y., Sitthisak, P., Robinson, R.C.

To be published

Released	2025-03-26
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Roadblock domain in P21 (protein)

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8YQL \| pdb_00008yql	Download File View File

Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P31

Kitaoku, Y., Sitthisak, P., Robinson, R.C.

To be published

Released	2025-03-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Roadblock domain in P31 (protein)
Unique Ligands	CL

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9JQ8 \| pdb_00009jq8	Download File View File

Roadblock2 homodimer structure from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

Ponlachantra, K., Robinson, R.C.

To be published

Released	2024-10-30
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Roadblock/LC7 domain protein (protein)

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9JUE \| pdb_00009jue	Download File View File

Roadblock3 homodimer structure from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

Ponlachantra, K., Robinson, R.C.

To be published

Released	2024-10-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Promethearchaeum syntrophicum
Macromolecule	Roadblock/LC7 domain protein (protein)
Unique Ligands	EPE

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7N8U | pdb_00007n8u

Crystal structure of Triosephosphate isomerase from Candidatus Prometheoarchaeum syntrophicum

7YH1 | pdb_00007yh1

Roadblock from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

8WHN | pdb_00008whn

Crystal Structure of the cytoplasmic domain of OST1 (Ribophorin I) from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

8YQG | pdb_00008yqg

Dimeric structure of the Longin domain from a Lokiarchaeota archaeon Roadblock-Longin protein

8YQK | pdb_00008yqk

Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P21

8YQL | pdb_00008yql

Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P31

9JQ8 | pdb_00009jq8

Roadblock2 homodimer structure from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

9JUE | pdb_00009jue

Roadblock3 homodimer structure from Candidatus Prometheoarchaeum syntrophicum strain MK-D1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7N8U | pdb_00007n8u

7YH1 | pdb_00007yh1

8WHN | pdb_00008whn

8YQG | pdb_00008yqg

8YQK | pdb_00008yqk

8YQL | pdb_00008yql

9JQ8 | pdb_00009jq8

9JUE | pdb_00009jue