1J08 | pdb_00001j08

Crystal structure of glutaredoxin-like protein from Pyrococcus horikoshii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1j08a1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
B	d1j08b1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
D	d1j08d1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
E	d1j08e1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
F	d1j08f1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
G	d1j08g1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
H	d1j08h1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
C	d1j08c1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	PDI-like	Protein disulfide isomerase, PDI	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Archaeal PDI-like	8058562	4000134	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioredoxin-like	8058563	3000031	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Thioredoxin-like	8058564	3000031	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8058563	3000031	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioredoxin-like	8058564	3000031	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Thioredoxin_3_1	e1j08A2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
B	Thioredoxin_3_1	e1j08B2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
D	Thioredoxin_3_1	e1j08D2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
E	Thioredoxin_3_1	e1j08E2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
F	Thioredoxin_3_1	e1j08F2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
G	Thioredoxin_3_1	e1j08G2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
H	Thioredoxin_3_1	e1j08H2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)
C	Thioredoxin_3_1	e1j08C2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: Thioredoxin_3_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF13192	Thioredoxin domain (Thioredoxin_3)	Thioredoxin domain		Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF13098	Thioredoxin-like domain (Thioredoxin_2)	Thioredoxin-like domain		Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012336	Thioredoxin-like fold	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011903	Disulfide oxidoreductase TON_0319-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.